View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_37 (Length: 247)
Name: NF20809_high_37
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41118381 - 41118154
Alignment:
| Q |
1 |
cttaaccaaaactctctaaaatcgcaatgaaagagcaactgagattttaaaaaataatagtaataagacaggggaaagaaggtcgaaggaccatgtatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41118381 |
cttaaccaaaactctctaaaatcgcaatgaaagagcaaatgagattttaaaaaataataataataagacaggggaaagaaggtcgaaggaccatgtatcc |
41118282 |
T |
|
| Q |
101 |
aagaatatgactataaaaatatataattcaagatggttgatacaatgtaacgtaatgtaattttatatcaaggtggctgatataacacaatgtaatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41118281 |
aagaatatgactataaaaatatataattcaagatggttgatacaat-----gtaatgtaattttatatcaaggtggctgatataacacaatgtaatttat |
41118187 |
T |
|
| Q |
201 |
ttaatttagtaatgataatgttttgcaatttaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41118186 |
ttaatttagtaatgataatgttttgcaatttaa |
41118154 |
T |
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