View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_high_4 (Length: 605)

Name: NF20809_high_4
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_high_4
NF20809_high_4
[»] chr5 (2 HSPs)
chr5 (79-600)||(43224849-43225376)
chr5 (23-95)||(16439201-16439277)
[»] chr4 (4 HSPs)
chr4 (23-97)||(47404582-47404660)
chr4 (23-92)||(50384107-50384180)
chr4 (54-92)||(55089879-55089917)
chr4 (25-83)||(55090007-55090069)
[»] chr1 (2 HSPs)
chr1 (23-99)||(4609059-4609139)
chr1 (23-81)||(1819502-1819564)
[»] chr3 (2 HSPs)
chr3 (23-97)||(55223295-55223373)
chr3 (23-92)||(33689239-33689312)
[»] chr2 (1 HSPs)
chr2 (23-89)||(2894026-2894096)
[»] scaffold0047 (1 HSPs)
scaffold0047 (23-76)||(63820-63877)
[»] chr6 (1 HSPs)
chr6 (23-96)||(10521847-10521924)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 79 - 600
Target Start/End: Complemental strand, 43225376 - 43224849
Alignment:
Q  79 tcacctaaatgctatccgttactcctcacttcgtttttccgcactttggcaacgataaata----------------tttgactgcgggatttaattgac 162  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||                ||||||||| ||||||||||||     
T  43225376 tcacctaagtgctatccgttactcctcgcttcgtttttccgcactttggcaacgataaatacagttaaagctatatatttgactgctggatttaattgat 43225277  T
Q  163 agcagagaatcaaggtccttcatg-aacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc 261  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43225276 agcagagaatcaaggtcctttatggaacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc 43225177  T
Q  262 attgttgttgccgcactttattctcctccactctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaac 361  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  43225176 attgttgttgccgcactttattctcctccattctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttat----ttaac 43225081  T
Q  362 tcatgtggtaactcatcttccttacattagtatcttaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat 461  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43225080 tcatgtcgtaactcatcttccttacattagcatctgaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat 43224981  T
Q  462 taggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgctatagtgcagattttttctctcatactgtgctctcnnnnnnn 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||            
T  43224980 taggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgc--tagtgcagattttttctctcttactgtgctct-----ttt 43224888  T
Q  562 nnncttctcgctctttatcctattatacaactctttctt 600  Q
        ||||||||||||||||| |||||||||||||||||    
T  43224887 ttttttctcgctctttatcctgttatacaactctttctt 43224849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 16439201 - 16439277
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatgctatcc 95  Q
    ||||||||||||||||| ||||||| |||||    |||| |||||||||||||||||| |||||  ||||| |||||    
T  16439201 tttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcacacaaatgttatcc 16439277  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 47404660 - 47404582
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatgctatccgt 97  Q
    ||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||| |||||| || ||||| ||||    
T  47404660 tttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctacccgt 47404582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 50384180 - 50384107
Alignment:
Q  23 tttctctctctttcacaggcattgtaacattttga----ccaatgtcacccaactctacgtcacctaaatgcta 92  Q
    ||||||||||||||||| ||||||| ||||| |||    ||||||||||||||||||| |||||| || |||||    
T  50384180 tttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgcta 50384107  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 55089917 - 55089879
Alignment:
Q  54 ttgaccaatgtcacccaactctacgtcacctaaatgcta 92  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  55089917 ttgaccaatgtcactcaactctatgtcacctaaatgcta 55089879  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 55090069 - 55090007
Alignment:
Q  25 tctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacc 83  Q
    ||||||||||||||| ||||||| |||||    |||||||||||||| |||||||| ||||||    
T  55090069 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtcacc 55090007  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 4609059 - 4609139
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatgctatccgtta 99  Q
    ||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||| |||||  || | ||||||||||    
T  4609059 tttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtactatccgtta 4609139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 1819564 - 1819502
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtca 81  Q
    ||||||||||||||||| ||||||| |||||    |||| |||||||||||||||||| ||||    
T  1819564 tttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtca 1819502  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 55223295 - 55223373
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatgctatccgt 97  Q
    ||||||||||||||||| ||||||| |||||    ||||||||| ||||  ||||||| |||||| || ||||||||||    
T  55223295 tttctctctctttcacaagcattgtgacattatgattgaccaatatcacttaactctatgtcacccaagtgctatccgt 55223373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 33689239 - 33689312
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatgcta 92  Q
    ||||||||||||||||| ||||||| |||||    ||| ||||||||||||||||| | |||||| || |||||    
T  33689239 tttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgcta 33689312  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 2894026 - 2894096
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactctacgtcacctaaatg 89  Q
    ||||||||||||||||| ||||||| ||| |    ||||||||||||| ||||||||| |||||| |||||    
T  2894026 tttctctctctttcacaagcattgtgacactgtgattgaccaatgtcatccaactctatgtcacccaaatg 2894096  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 63820 - 63877
Alignment:
Q  23 tttctctctctttcacaggcattgtaacatt----ttgaccaatgtcacccaactcta 76  Q
    ||||||||||||||||| ||||||| |||||    ||| |||||||||||||||||||    
T  63820 tttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactcta 63877  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 10521924 - 10521847
Alignment:
Q  23 tttctctctctttcacaggcattgtaacattttga----ccaatgtcacccaactctacgtcacctaaatgctatccg 96  Q
    ||||||||||||||| | ||||||| ||||| |||    ||||||||||| ||||||| |||||| || |||||||||    
T  10521924 tttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctatccg 10521847  T

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