View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_44 (Length: 238)
Name: NF20809_high_44
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41118700 - 41118937
Alignment:
| Q |
1 |
tctgttcaagaagtttcaatcaaattatttctgataccagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatatt |
100 |
Q |
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| T |
41118700 |
tctgttcaagaagtttcaatcaaattatttctgataccagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatatt |
41118799 |
T |
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| Q |
101 |
atcagattcaaagaggtaacagtttttctttctttaactgtttctt-----------------cattatgaatgcagtatttggttatctgtattacttc |
183 |
Q |
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| T |
41118800 |
atcagattcaaagaggtaacagtttttctttcttaaactgtttcttcattaggtttgtagggccattatgaatgcagtatttggttatctgtattacttc |
41118899 |
T |
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| Q |
184 |
atgcttactgctctcattttacacacttctttgaattt |
221 |
Q |
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| T |
41118900 |
atgcttactgctctcattttacacacttctttgaattt |
41118937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 41124922 - 41125042
Alignment:
| Q |
32 |
tgataccagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatattatcagattcaaagaggtaacagttttt-ctt |
130 |
Q |
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| T |
41124922 |
tgatgccagattgatgagaatgttcaaagggagataattaaccaccgatcgttaaggcatcctaatattatcagattcaaagaggtaacagtttttcctt |
41125021 |
T |
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| Q |
131 |
tctttaactgtttcttcatta |
151 |
Q |
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| T |
41125022 |
ccttaaactgtttcttcatta |
41125042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 52248720 - 52248761
Alignment:
| Q |
85 |
aaggcatcctaatattatcagattcaaagaggtaacagtttt |
126 |
Q |
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| T |
52248720 |
aaggcatcctaatatttacagattcaaagaggtaagagtttt |
52248761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 4321439 - 4321358
Alignment:
| Q |
38 |
cagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatattatcagattcaaagaggtaa |
119 |
Q |
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| T |
4321439 |
cagattgatgagaatgttccaagggagatagttaaccatcgatctttaaggcatccaaatattatcaagttcaaagaggtaa |
4321358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 27107794 - 27107715
Alignment:
| Q |
38 |
cagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatattatcagattcaaagaggt |
117 |
Q |
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| T |
27107794 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
27107715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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