View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_53 (Length: 209)
Name: NF20809_high_53
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 30682412 - 30682234
Alignment:
| Q |
18 |
cacagaggcaggttggaggcaaaccaatgaccgcgacttaatcgttgagagaagcgactcaatggaagaggccaccatcaagtggtgacccaattggtag |
117 |
Q |
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| T |
30682412 |
cacagaggcaggttggaggcaaaccaatgaccgcgacttaatcgttgagagaagtgactcaatggaagaggccaccatcaagtggcgacccaattggtag |
30682313 |
T |
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| Q |
118 |
aaattgctttccaaccatggcggagaaagctgact------cagtgacgatcttttgttttctatttgatattggtttt |
190 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |
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| T |
30682312 |
aaattgctttcctaccatggcggagaaagctgactcagttgcagtgacgatattttcttttctatttgatattggtttt |
30682234 |
T |
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