View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_high_6 (Length: 505)

Name: NF20809_high_6
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_high_6
NF20809_high_6
[»] chr4 (5 HSPs)
chr4 (161-350)||(19178690-19178877)
chr4 (372-495)||(19178491-19178614)
chr4 (385-463)||(46557223-46557301)
chr4 (242-335)||(3066924-3067017)
chr4 (280-340)||(3065788-3065848)
[»] chr3 (3 HSPs)
chr3 (262-341)||(1691648-1691727)
chr3 (242-326)||(1690754-1690838)
chr3 (247-310)||(24693794-24693857)
[»] chr5 (2 HSPs)
chr5 (242-340)||(1277799-1277898)
chr5 (376-443)||(43273537-43273604)
[»] chr8 (2 HSPs)
chr8 (242-313)||(16219826-16219897)
chr8 (242-340)||(16222511-16222611)
[»] chr2 (2 HSPs)
chr2 (242-340)||(12172419-12172518)
chr2 (248-317)||(12173401-12173470)
[»] chr7 (2 HSPs)
chr7 (385-442)||(10087906-10087963)
chr7 (385-425)||(29538085-29538125)
[»] chr1 (4 HSPs)
chr1 (401-445)||(8875288-8875332)
chr1 (385-436)||(9853667-9853718)
chr1 (274-340)||(45428574-45428641)
chr1 (279-312)||(45427551-45427584)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 161 - 350
Target Start/End: Complemental strand, 19178877 - 19178690
Alignment:
Q  161 atgacgggagtaattgtctcgccaaatccatcattgataagggcttggcataaatctattccgtcaaaagtagcacgtttacatggcattaatgagcctg 260  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  19178877 atgacaggagtaattgtctcgccaaatccatcattggcaagggcttggcataaatctattccgtcaaa--tagcacgcttacatggcattaatgagcctg 19178780  T
Q  261 ccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaataagggaatc-aaaaacatgttttataaaagaaaattgtt 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19178779 ccacatcattctga-ggggagggggaccaaaaaatttgttgactttttaaataagggaatcaaaaaacatgttttataaaagaaaattgtt 19178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 372 - 495
Target Start/End: Complemental strand, 19178614 - 19178491
Alignment:
Q  372 gagtaaccgacgatagttaactaccgatgtggttattttccatcggcagttaaccgctgcggagcttcaaacctcaaaatttccatcataatgggcaaga 471  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  19178614 gagtaaccgacgatagttaactaccgatgtggttattttccattggcggttaacagctgcggagcttcaaacctcaaattttccatcataatgggcaaga 19178515  T
Q  472 gtgcaccattccggtcccccaaat 495  Q
    ||||||||||||||||||||||||    
T  19178514 gtgcaccattccggtcccccaaat 19178491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 46557301 - 46557223
Alignment:
Q  385 tagttaactaccgatgtggttattttccatcggcagttaaccgctgcggagcttcaaacctcaaaatttccatcataat 463  Q
    |||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||| ||| |||||||||||||    
T  46557301 tagttaactaccgatgtggttatttttcatcggcagttaattgccgcggagcttcaaacctgaaattttccatcataat 46557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 335
Target Start/End: Original strand, 3066924 - 3067017
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaata-agggaatcaaaaacatgtttta 335  Q
    |||| ||||||||||| || ||||||||  ||||||||| ||||| ||||||| ||||||| |||||||||| |||||   ||||||||||||||    
T  3066924 catgtcattaatgagcatgtcacatcatcttgaggggga-ggggaacaaaaaaattgttgattttttaaatagagggatcaaaaaacatgtttta 3067017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 3065848 - 3065788
Alignment:
Q  280 agggggaccaaaaaatttgttgactttttaaataagggaatcaaaaacatgttttataaaa 340  Q
    ||||||||||||||||||||| || ||||||||| | || | |||||||| ||||| ||||    
T  3065848 agggggaccaaaaaatttgttaacattttaaataggcgattaaaaaacatattttagaaaa 3065788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 1691648 - 1691727
Alignment:
Q  262 cacatcattctgagggggagggggaccaaaaaatttgttgactttttaaataagggaatcaaaaacatgttttataaaag 341  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||||||| ||| || |||||||||||||| |||||    
T  1691648 cacatcatcctgagggggagggagatcaaaaaatttgttgactttttaaatagggggataaaaaacatgttttaaaaaag 1691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 1690838 - 1690754
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaataagggaatcaaaaa 326  Q
    |||| ||||||||||| |||||| | ||  |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  1690838 catgtcattaatgagcatgccacgtaatcatgagggggagggggaccaaaaaatatgttgactttttgaataaggggatcaaaaa 1690754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 24693794 - 24693857
Alignment:
Q  247 cattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaa 310  Q
    ||||||||||| ||||||||||   | || | |||||||||||||||||||||||| |||||||    
T  24693794 cattaatgagcatgccacatcaccttaagagagagggggaccaaaaaatttgttgattttttaa 24693857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 1277799 - 1277898
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaa-aatttgttgactttttaaataagggaatc-aaaaacatgttttataaa 339  Q
    |||| ||||||||||| ||| ||||||| |||| ||||||||||||||||| |||||||| |||||||||||| ||| ||| ||||||||||||||||||    
T  1277799 catgtcattaatgagcatgc-acatcatcctgaaggggagggggaccaaaaaaatttgttaactttttaaatagggggatcaaaaaacatgttttataaa 1277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 43273604 - 43273537
Alignment:
Q  376 aaccgacgatagttaactaccgatgtggttattttccatcggcagttaaccgctgcggagcttcaaac 443  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| || | ||||||| ||||    
T  43273604 aaccggcgatagttaactaccgatgtggttattttccatcagcagttaactgccgtggagctttaaac 43273537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 16219826 - 16219897
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaata 313  Q
    |||| ||||||||||| ||||||||||||| | | |||||||||||||||||||||||| ||||||||||||    
T  16219826 catgtcattaatgagcatgccacatcattcagggagggagggggaccaaaaaatttgttcactttttaaata 16219897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 16222511 - 16222611
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaata-agggaatc-aaaaacatgttttataaa 339  Q
    |||| ||||||||||| ||||||||||| |   |||||||||||||||||||||||||| ||||||||||||  ||| ||| |||||||||||||| |||    
T  16222511 catgtcattaatgagcatgccacatcatccgaggggggagggggaccaaaaaatttgttcactttttaaataggggggatcaaaaaacatgttttagaaa 16222610  T
Q  340 a 340  Q
    |    
T  16222611 a 16222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 12172518 - 12172419
Alignment:
Q  242 catggcattaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaataagggaatc-aaaaacatgttttataaaa 340  Q
    |||| ||||||||||| | ||||||||| ||||  ||||||| ||||||||||||||||||||||||||||| |||  || |||||||||||||| ||||    
T  12172518 catgtcattaatgagcataccacatcatcctgaaagggagggtgaccaaaaaatttgttgactttttaaataggggggtcaaaaaacatgttttagaaaa 12172419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 12173401 - 12173470
Alignment:
Q  248 attaatgagcctgccacatcattctgagggggagggggaccaaaaaatttgttgactttttaaataaggg 317  Q
    |||||||| | ||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||    
T  12173401 attaatgaacatgccacatcatcctgagggggagggtgagcaaaaaatttgttgactttttaaacaaggg 12173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 10087906 - 10087963
Alignment:
Q  385 tagttaactaccgatgtggttattttccatcggcagttaaccgctgcggagcttcaaa 442  Q
    |||||||||| ||||||||||||||||||||| |||| ||| || |||||||||||||    
T  10087906 tagttaactatcgatgtggttattttccatcgacagtaaactgccgcggagcttcaaa 10087963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 29538125 - 29538085
Alignment:
Q  385 tagttaactaccgatgtggttattttccatcggcagttaac 425  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  29538125 tagttaactttcgatgtggttatttttcatcggcagttaac 29538085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 8875288 - 8875332
Alignment:
Q  401 tggttattttccatcggcagttaaccgctgcggagcttcaaacct 445  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  8875288 tggttattttccatcggcaattaactgctgcagagcttcaaacct 8875332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Complemental strand, 9853718 - 9853667
Alignment:
Q  385 tagttaactaccgatgtggttattttccatcggcagttaaccgctgcggagc 436  Q
    ||||||||||  |||||||||||||||||| || ||||||| ||||||||||    
T  9853718 tagttaactattgatgtggttattttccattggaagttaactgctgcggagc 9853667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 45428574 - 45428641
Alignment:
Q  274 agggggagggggaccaaaaaatttgttgactttttaaataagg-gaatcaaaaacatgttttataaaa 340  Q
    ||||||||||| ||||||||||||||||||||||| || ||||   || |||||||||||||| ||||    
T  45428574 agggggaggggaaccaaaaaatttgttgacttttttaaaaaggatgataaaaaacatgttttagaaaa 45428641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 45427584 - 45427551
Alignment:
Q  279 gagggggaccaaaaaatttgttgactttttaaat 312  Q
    |||||||||||||| |||||||||||||||||||    
T  45427584 gagggggaccaaaagatttgttgactttttaaat 45427551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University