View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_7 (Length: 503)
Name: NF20809_high_7
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_7 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Complemental strand, 41143362 - 41142896
Alignment:
| Q |
7 |
gtgagaagaaagagggagaaaaagcaaaggaagtcggaactaaggtagaggttaataaaatggagcatcatggttacggatatgggcatcaaactcctat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41143362 |
gtgagaagaaagagggagaaaaagcaaaggaagtcggaactaaggtagaggttaataaaatggagcatcatggttatggatatgggcatcaaactcctat |
41143263 |
T |
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| Q |
107 |
gtattggtatgacggatatgaaccgggtcaaagtannnnnnnnnnnnnnnnnnnnagtagtagtagtaactacgcgatgcaggttcagccagggtattcg |
206 |
Q |
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| T |
41143262 |
gtattggtatgacggatatgaaccgggtcaaaatagtggtggt------------agtagtagtagtaactacgcgatgcaggttcagccagggtattcg |
41143175 |
T |
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| Q |
207 |
aatcaacaagtgcacaattataattatgtgaatcaagaagggtataattacaattatgtgaaccaacaccaacaagggtatgattataattatgtgaatc |
306 |
Q |
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| T |
41143174 |
aatcaacaagtgcacaattataattatgtgaatcaagaagggtataattacaattatgcgaaccaacaccaacaagggtatgattataattatgtgaatc |
41143075 |
T |
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| Q |
307 |
atcaaggccaaggtgggcatatggtggaacctcaatatcaatatcagcaacctcagttttacttgcatccaaatcaacctcctccacaaatgtttagtga |
406 |
Q |
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| T |
41143074 |
atcaaggccaaggtgggcatatggtggaacctcaatatcaatatcagcaacctcagttttacttgcatccaaatcaacctcctccacaaatgtttagtga |
41142975 |
T |
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| Q |
407 |
tgaaaatccgaatgcatgttccatgatgtgagcattttaccattgaggaaaacatatttttgtttttggagtatacaat |
485 |
Q |
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| T |
41142974 |
tgaaaatccgaatgcttgttccatgatgtgagcattttaccattgaggaaaacatatttttgtttttggagtatacaat |
41142896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 111949 - 112078
Alignment:
| Q |
7 |
gtgagaagaaagagggagaaaaagcaaaggaagtcggaactaaggtagaggttaataaaatggagcatcatggttacggatatgggcatcaaactcctat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
111949 |
gtgagaagaaagagggagaaaaagcaaaggaagtcggaactaaggtagaggttaataaaatggagcatcatggttatggatatgggcatcaaactcctat |
112048 |
T |
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| Q |
107 |
gtattggtatgacggatatgaaccgggtca |
136 |
Q |
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| T |
112049 |
gtattggtatgacggatatgaaccgggtca |
112078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 40787101 - 40787064
Alignment:
| Q |
390 |
ccacaaatgtttagtgatgaaaatccgaatgcatgttc |
427 |
Q |
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| T |
40787101 |
ccacaaatgtttagtgatgaaaatcctaatgcttgttc |
40787064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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