View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_1 (Length: 770)

Name: NF20809_low_1
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_1
NF20809_low_1
[»] chr5 (7 HSPs)
chr5 (450-767)||(14515262-14515579)
chr5 (242-450)||(14515091-14515301)
chr5 (576-744)||(9335241-9335410)
chr5 (682-744)||(37251318-37251380)
chr5 (682-744)||(39655522-39655584)
chr5 (561-633)||(40821406-40821477)
chr5 (678-767)||(42729066-42729157)
[»] chr7 (9 HSPs)
chr7 (498-762)||(30879560-30879823)
chr7 (576-744)||(43364208-43364377)
chr7 (689-744)||(29032206-29032261)
chr7 (688-746)||(29865137-29865195)
chr7 (682-744)||(1275276-1275338)
chr7 (682-744)||(22909803-22909865)
chr7 (636-739)||(9701756-9701860)
chr7 (561-633)||(28442524-28442595)
chr7 (561-633)||(41542538-41542609)
[»] chr3 (9 HSPs)
chr3 (450-746)||(545832-546128)
chr3 (682-744)||(3589085-3589147)
chr3 (682-744)||(1231905-1231967)
chr3 (688-767)||(4501054-4501135)
chr3 (682-744)||(23194605-23194667)
chr3 (682-744)||(24899343-24899405)
chr3 (682-744)||(24905809-24905871)
chr3 (576-667)||(18866821-18866912)
chr3 (699-748)||(4674889-4674939)
[»] chr2 (10 HSPs)
chr2 (458-762)||(22599909-22600213)
chr2 (264-400)||(28392539-28392676)
chr2 (271-450)||(22600182-22600362)
chr2 (552-757)||(13031824-13032030)
chr2 (682-744)||(21160665-21160727)
chr2 (576-744)||(43669732-43669901)
chr2 (688-746)||(16105091-16105149)
chr2 (561-633)||(44611321-44611392)
chr2 (682-731)||(9786530-9786579)
chr2 (688-744)||(44611208-44611265)
[»] chr8 (15 HSPs)
chr8 (480-753)||(1216077-1216349)
chr8 (682-744)||(13510649-13510711)
chr8 (682-744)||(13600179-13600241)
chr8 (682-744)||(17993552-17993614)
chr8 (688-746)||(22242653-22242711)
chr8 (698-746)||(21693150-21693198)
chr8 (682-746)||(22226918-22226982)
chr8 (682-746)||(22233260-22233324)
chr8 (682-744)||(4861365-4861427)
chr8 (693-767)||(4435102-4435178)
chr8 (698-767)||(2268566-2268637)
chr8 (689-762)||(9907113-9907188)
chr8 (682-744)||(12538849-12538911)
chr8 (682-746)||(22222087-22222149)
chr8 (682-746)||(22228429-22228491)
[»] chr4 (8 HSPs)
chr4 (549-767)||(24630268-24630486)
chr4 (698-746)||(8847814-8847862)
chr4 (315-398)||(24630073-24630156)
chr4 (682-744)||(33110108-33110170)
chr4 (576-762)||(23543636-23543824)
chr4 (682-744)||(53896065-53896127)
chr4 (636-739)||(13567995-13568099)
chr4 (688-767)||(667877-667958)
[»] chr1 (12 HSPs)
chr1 (275-415)||(43102398-43102539)
chr1 (682-744)||(36084443-36084505)
chr1 (649-767)||(19329310-19329429)
chr1 (549-709)||(34521438-34521598)
chr1 (682-746)||(8995672-8995736)
chr1 (578-744)||(21814778-21814945)
chr1 (480-634)||(44785497-44785649)
chr1 (682-744)||(15162112-15162174)
chr1 (576-744)||(9315921-9316090)
chr1 (675-757)||(44785396-44785480)
chr1 (682-744)||(9293100-9293162)
chr1 (682-744)||(3365638-3365700)
[»] chr6 (11 HSPs)
chr6 (458-767)||(13105140-13105447)
chr6 (288-450)||(13105416-13105578)
chr6 (576-744)||(18765648-18765817)
chr6 (683-744)||(9517859-9517920)
chr6 (689-739)||(1455484-1455534)
chr6 (689-739)||(1467176-1467226)
chr6 (682-744)||(25977635-25977697)
chr6 (682-744)||(34007142-34007204)
chr6 (682-744)||(34914374-34914437)
chr6 (682-744)||(14271358-14271420)
chr6 (561-633)||(24908499-24908570)
[»] scaffold0291 (1 HSPs)
scaffold0291 (636-757)||(1866-1989)
[»] scaffold0265 (1 HSPs)
scaffold0265 (578-744)||(17864-18031)
[»] scaffold0515 (1 HSPs)
scaffold0515 (682-744)||(7442-7504)
[»] scaffold0306 (1 HSPs)
scaffold0306 (682-744)||(7452-7514)
[»] scaffold0160 (1 HSPs)
scaffold0160 (682-744)||(34736-34798)
[»] scaffold0152 (1 HSPs)
scaffold0152 (682-744)||(25063-25125)
[»] scaffold0091 (1 HSPs)
scaffold0091 (682-744)||(14870-14932)
[»] scaffold0859 (1 HSPs)
scaffold0859 (682-740)||(4762-4820)
[»] scaffold0505 (1 HSPs)
scaffold0505 (682-744)||(397-459)
[»] scaffold0013 (1 HSPs)
scaffold0013 (292-450)||(239404-239562)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 450 - 767
Target Start/End: Original strand, 14515262 - 14515579
Alignment:
Q  450 cgattaatcgatatgatcgacctcacaacattattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaata 549  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14515262 cgattaaccgatatgatcgacctcacaacattattcagacataaacattgtttgccgagcaacatgtgagaatatcgagtgataactagatattgcaata 14515361  T
Q  550 ctaatcataataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatct 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| | |||    
T  14515362 ctaatcataataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttccttgttaattcttgtaccatttacattttcatagctgtct 14515461  T
Q  650 agcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgatacaaaa 749  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14515462 agcttatgaaacaaaacatatcaaaattctatcacttagaacaatattgattgttgaacggcttgaatatcgcactagtccttgtggagacgatacaaaa 14515561  T
Q  750 atatttacctttgctact 767  Q
    ||||||||||||| ||||    
T  14515562 atatttacctttgatact 14515579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 242 - 450
Target Start/End: Original strand, 14515091 - 14515301
Alignment:
Q  242 ttttaatgctttaatcatacgt-tttcaactgttattgacaaatacctttgaatctagcttaggataatatctattaaacactaaactctagaaatagat 340  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14515091 ttttaatgctttaatcatacgtgtttcaattgttattgacaaatacctttgaatctagcttaggataatatctattaaacactaaactctagaaatagct 14515190  T
Q  341 tatgggtttaatattcacttaaa-aattgaatcttaatgctatcatattggttaataggctcacaaatcgtcgattgattgatatgatcgacctcacaat 439  Q
    | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||     
T  14515191 tttgggtttaatattcacttaaagaatagaatcttaatgctatcatattggttaataggctcagaaatcgtcgattaaccgatatgatcgacctcacaac 14515290  T
Q  440 attatttagac 450  Q
    |||||| ||||    
T  14515291 attattcagac 14515301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 744
Target Start/End: Original strand, 9335241 - 9335410
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| ||||||| |||| | ||||| ||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  |    
T  9335241 ggttgatgaagtttaatcccagcataatcatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattacca 9335340  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
     || || |||  ||||||||| |||||||||||||||| || |||||||  ||||| |||||||||||||    
T  9335341 ctccattactcagaacaatatagattgttgaacggcttagattatcgcaccagtccctgtggagacgata 9335410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 37251380 - 37251318
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||| |||||| |  ||||||||||||||||||||    
T  37251380 cacttagaacaatattgattgttgaatgactttaatatcacgctagtccttgtggagacgata 37251318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 39655584 - 39655522
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||  | |||||||||||    
T  39655584 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtctatatggagacgata 39655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 633
Target Start/End: Original strand, 40821406 - 40821477
Alignment:
Q  561 aatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttac 633  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||||| ||||||| ||| || ||||||||    
T  40821406 aatacatatgaa-taggttgatgaagtttaatcccaacataatcatttccctgttaactctcgtcccatttac 40821477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 767
Target Start/End: Complemental strand, 42729157 - 42729066
Alignment:
Q  678 ctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttgctact 767  Q
    |||| |||| |||||||||||||||||||| | ||| |||||| |||  ||||| |||||||||||| ||||||||| |||| |||| ||||    
T  42729157 ctataacttagaacaatattgattgttgaatgacttagaatattgcaccagtccctgtggagacgataacaaaaatacttacttttgatact 42729066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 5e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 498 - 762
Target Start/End: Complemental strand, 30879823 - 30879560
Alignment:
Q  498 tgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaatactaatcataataatacatatgaaatgggttgatgaagttcaatcccaa 597  Q
    |||||||||||||| |||||| ||||| ||||  ||| ||||   || || ||||||||||| ||||||| |||||| ||||||||||||| ||||| ||    
T  30879823 tgtttgccgagcaatacgtgataatatagagtagtaattagaatatgtaacactaatcataagaatacatgtgaaataggttgatgaagtttaatcc-aa 30879725  T
Q  598 catactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaattctatcacttggaacaatatt 697  Q
    |||||| ||||||||||||| ||||||| ||| |||| |||||| ||| || |||||||||||   ||||  | ||||||| ||||||| ||||||||||    
T  30879724 catacttatttctctgttaactcttgtatcatctacattttcatcgttttcaagcttatgaaatcgaacaccttaaaattccatcacttagaacaatatt 30879625  T
Q  698 gattgttgaacggcttgaatatcgcattagtccttgtggagacgatacaaaaatatttacctttg 762  Q
     |||||||||||  || ||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  30879624 aattgttgaacgatttaaatatcgcactagtccttgtggagacaatacaaaaatatttacttttg 30879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 744
Target Start/End: Complemental strand, 43364377 - 43364208
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| ||||||| |||  | ||||||||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  |    
T  43364377 ggttgatgaagtttaatcccagcatcatcatttctctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattacca 43364278  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
     || || |||  |||| |||| |||||||||||||||| ||||||||||  ||||| |||||||||||||    
T  43364277 ctccattactcagaacgatatagattgttgaacggcttagaatatcgcaccagtccctgtggagacgata 43364208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 744
Target Start/End: Complemental strand, 29032261 - 29032206
Alignment:
Q  689 aacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||    
T  29032261 aacaatattgattgttgaatggcttgaatatcgcgctagtccttgtggtgacgata 29032206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 746
Target Start/End: Original strand, 29865137 - 29865195
Alignment:
Q  688 gaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    |||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  29865137 gaacgatatcgattgttgaacgacttgaatatcgcactagtccatgtggagacgataca 29865195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 1275276 - 1275338
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||| ||||||||||||| | ||||||||||||  |||||| |||||||||||||    
T  1275276 cacttagaacaacattgattgttgaatgacttgaatatcgcgctagtccctgtggagacgata 1275338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 22909803 - 22909865
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| |||||||||||| |  |||||| |||||||| ||||    
T  22909803 cacttagaacaatattgattgttgaatggcttgaatatcacgctagtccctgtggagatgata 22909865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 739
Target Start/End: Complemental strand, 9701860 - 9701756
Alignment:
Q  636 tttcatagttatctagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgt 734  Q
    |||||||||| ||||| |||||||||||||| ||| |  | || || |||  |||||| || |||||||||||||||| ||||||||||  ||||| |||    
T  9701860 tttcatagttttctagtttatgaaacaaaacttattaccactccattactcagaacaacatagattgttgaacggcttagaatatcgcaccagtccctgt 9701761  T
Q  735 ggaga 739  Q
    |||||    
T  9701760 ggaga 9701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 633
Target Start/End: Complemental strand, 28442595 - 28442524
Alignment:
Q  561 aatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttac 633  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||||| ||||||| ||| || ||||||||    
T  28442595 aatacatatgaa-taggttgatgaagtttaatcccaacataatcatttccctgttaactctcgtcccatttac 28442524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 633
Target Start/End: Complemental strand, 41542609 - 41542538
Alignment:
Q  561 aatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttac 633  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||||| ||||||| ||| || ||||||||    
T  41542609 aatacatatgaa-taggttgatgaagtttaatcccaacataatcatttccctgttaactctcgtcccatttac 41542538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 450 - 746
Target Start/End: Complemental strand, 546128 - 545832
Alignment:
Q  450 cgattaatcgatatgatcgacctcacaacattattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaata 549  Q
    ||||||| ||||| |||||| | | |||  ||||| |||||| || | |||||||||||||| || |||||||||| |||||||||||||   |||||||    
T  546128 cgattaaccgatacgatcgaacccgcaaacttatttagacatgaataatgtttgccgagcaatacatgagaatatcaagtgataactagaatctgcaata 546029  T
Q  550 ctaatcataataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatct 649  Q
     ||||||| | ||||||||| |  | ||||||||||||| ||||||| |||| | ||||| ||||||| |||  |||  |||||| |||||||||| |||    
T  546028 ttaatcatgagaatacatataagttaggttgatgaagtttaatcccagcatattcatttccctgttaactctcatactgtttacaatttcatagttttct 545929  T
Q  650 agcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    || |||||||||||||| |||||| | || ||||||||||||| ||| |||||||||||||||||||||| |||  ||| | |||||||||||||||    
T  545928 agtttatgaaacaaaacttatcaacactccatcacttggaacagtatagattgttgaacggcttgaatattgcaccagttcctgtggagacgataca 545832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 3589085 - 3589147
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||    
T  3589085 cacttagaacaatattgattgttgaatggcttgaatatcgcactagtccctgttgagacgata 3589147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 1231967 - 1231905
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||||||||||||  |||||| |||||||||||||    
T  1231967 cacttagaacaatattgattgttgaatgacttgaatatcgcgctagtccctgtggagacgata 1231905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 767
Target Start/End: Complemental strand, 4501135 - 4501054
Alignment:
Q  688 gaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttgctact 767  Q
    |||| ||| ||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||| |||| |||| ||||    
T  4501135 gaacgatactgattgttgaacggcttagaatatcgcactagtccatgtggagacgataacaaaaatacttacttttgatact 4501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 23194605 - 23194667
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||| ||| | ||||||||||||  |||||| |||||||||||||    
T  23194605 cacttagaacaatattgattgtcgaatgacttgaatatcgcgctagtccctgtggagacgata 23194667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 24899405 - 24899343
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| || ||||||||||| ||||| | ||||||||||||| |||||| |||||||||||||    
T  24899405 cacttagatcaatattgattattgaatgtcttgaatatcgcactagtccctgtggagacgata 24899343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 24905871 - 24905809
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| || ||||||||||| ||||| | ||||||||||||| |||||| |||||||||||||    
T  24905871 cacttagatcaatattgattattgaatgtcttgaatatcgcactagtccctgtggagacgata 24905809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 667
Target Start/End: Complemental strand, 18866912 - 18866821
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaaca 667  Q
    ||||||||||||| |||||||||||| | ||||| ||||||| |||| | ||||| ||| || | ||||| | ||| ||||||| |||||||    
T  18866912 ggttgatgaagtttaatcccaacataatcatttccctgttaactcttatcccattcacatttccgtagttttatagtttatgaaccaaaaca 18866821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 748
Target Start/End: Complemental strand, 4674939 - 4674889
Alignment:
Q  699 attgttgaacggctt-gaatatcgcattagtccttgtggagacgatacaaa 748  Q
    ||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  4674939 attgttgaacggcttagaatatcgcaccagtccctgtggagacgatacaaa 4674889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 458 - 762
Target Start/End: Complemental strand, 22600213 - 22599909
Alignment:
Q  458 cgatatgatcgacctcacaacattattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaatactaatcat 557  Q
    ||||||||| || |||||||  ||||| |||||| || | ||||| |||||||| |||||| ||||||||||||||||||||   |||||||||||||||    
T  22600213 cgatatgattgaactcacaagcttatttagacatgaataatgttttccgagcaatacgtgaaaatatcgagtgataactagaatctgcaatactaatcat 22600114  T
Q  558 aataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatg 657  Q
     | ||||||||| |  | ||||||||||||| ||||||| |||| | ||||| ||||||| |||||| ||||||||| ||| ||||     ||||||| |    
T  22600113 gagaatacatataagttaggttgatgaagtttaatcccagcatattcatttccctgttaactcttgtcccatttacaattt-atagcctgttagcttacg 22600015  T
Q  658 aaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgat-acaaaaatattta 756  Q
    | ||||||||  | | ||||||||  ||| ||||||||| |||||||||||  ||| | ||| ||| ||||||||||||||||||| ||||||||| |||    
T  22600014 atacaaaacacttgataattctatagcttagaacaatatcgattgttgaacaacttaagtattgcactagtccttgtggagacgataacaaaaatactta 22599915  T
Q  757 cctttg 762  Q
    | ||||    
T  22599914 cttttg 22599909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 28392676 - 28392539
Alignment:
Q  264 tttcaactgttattgacaaatacctttgaatctagcttaggataatatctattaaacactaaactctagaaatagattatgggtttaatattcacttaaa 363  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||| |||| || ||||||||||||||||| |||    
T  28392676 tttcaattgttattgacaaatacttttgaatctagtttaggataatatctattaaaaactaaaatctagacatagcttttgggtttaatattcactcaaa 28392577  T
Q  364 -aattgaatcttaatgctatcatattggttaataggct 400  Q
      ||| || |||||||||| ||||||||||||||||||    
T  28392576 gtattaaaacttaatgctaccatattggttaataggct 28392539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 271 - 450
Target Start/End: Complemental strand, 22600362 - 22600182
Alignment:
Q  271 tgttattgacaaataccttt-gaatctagcttaggataatatctattaaacactaaactctagaaatagattatgggtttaatattcacttaaaa-attg 368  Q
    ||||||||| |||||| ||| |||||||| |||| ||||| |||||| ||| ||||| |||||||||||||| | |||||||||||||| |||   ||||    
T  22600362 tgttattgaaaaatacgttttgaatctaggttagaataatgtctattgaactctaaattctagaaatagatt-taggtttaatattcacataaggtattg 22600264  T
Q  369 aatcttaatgctatcatattggttaataggctcacaaatcgtcgattgattgatatgatcgacctcacaatattatttagac 450  Q
    ||||||||||||||||||| ||| |||||| | | ||||||||||||||  |||||||| || |||||||  ||||||||||    
T  22600263 aatcttaatgctatcatatcggtaaataggttgagaaatcgtcgattgaccgatatgattgaactcacaagcttatttagac 22600182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 552 - 757
Target Start/End: Original strand, 13031824 - 13032030
Alignment:
Q  552 aatcataataatacatatgaaatgggttgatgaagttcaatccc-aacatactaatttctctgttaattcttgtaccatttacactttcatagttatcta 650  Q
    |||||||| ||||||| |||||| ||||||| ||||| |||||| |||||||| || |||||||||| | | ||| || ||||| | | | |||| | ||    
T  13031824 aatcataagaatacatgtgaaataggttgataaagtttaatccccaacatacttatatctctgttaactttcgtatcacttacattgttagagttttata 13031923  T
Q  651 gcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgatacaaaaa 750  Q
    ||||||||||| |||||  | | |||| ||||| |   ||  ||||| ||||||||||||||| ||||||||| || || || || ||||||||||||||    
T  13031924 gcttatgaaaccaaacaccttacaattatatcattgaaaatcatattaattgttgaacggcttaaatatcgcactaatctttatgaagacgatacaaaaa 13032023  T
Q  751 tatttac 757  Q
    || ||||    
T  13032024 tacttac 13032030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 21160665 - 21160727
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||||||||||||  |||||| |||||||||||||    
T  21160665 cacttagaacaatattgattgttgaatgacttgaatatcgcgctagtccctgtggagacgata 21160727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 576 - 744
Target Start/End: Complemental strand, 43669901 - 43669732
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| ||||||| |||| | ||||| ||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  |    
T  43669901 ggttgatgaagtttaatcccagcataatcatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattacca 43669802  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
     || || |||  |||  |||| |||||||||||||||| ||||||||||  ||||| | |||||||||||    
T  43669801 ctccattactcagaatgatatagattgttgaacggcttagaatatcgcaccagtccctatggagacgata 43669732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 746
Target Start/End: Original strand, 16105091 - 16105149
Alignment:
Q  688 gaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||||||| |||| |||||||| ||||||||||| |||| |||||| |||||||||||    
T  16105091 gaacaatatcgattattgaacggtttgaatatcgcgttagcccttgtagagacgataca 16105149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 633
Target Start/End: Complemental strand, 44611392 - 44611321
Alignment:
Q  561 aatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttac 633  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||||| ||||||| ||| || ||||||||    
T  44611392 aatacatatgaa-taggttgatgaagtttaatcccaacataatcatttccctgttaactctcgtcccatttac 44611321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 9786579 - 9786530
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtcct 731  Q
    ||||| |||||||||||||||||||| | |||||||||| || |||||||    
T  9786579 cacttagaacaatattgattgttgaatgacttgaatatcacactagtcct 9786530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 744
Target Start/End: Complemental strand, 44611265 - 44611208
Alignment:
Q  688 gaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
    |||| ||||| ||||||||||||||| ||||||||||  ||||| |||||||||||||    
T  44611265 gaacgatattaattgttgaacggcttagaatatcgcaccagtccctgtggagacgata 44611208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 480 - 753
Target Start/End: Complemental strand, 1216349 - 1216077
Alignment:
Q  480 ttattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaatactaatcataataatacatat--gaaatggg 577  Q
    ||||| ||||||||| | |||||| ||||||| ||||||||||||| ||||| ||||||| | ||||||||||||||||| |||||||||  ||||| |     
T  1216349 ttatttagacataaataatgtttgtcgagcaatacgtgagaatatcaagtgagaactagaaactgcaatactaatcataagaatacatatatgaaataga 1216250  T
Q  578 ttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaatt 677  Q
    |||||      ||||||||||||||| ||||||||||||| ||| ||||| |||||| |||  | |||  |||| ||||||||||||||| ||  |||||    
T  1216249 ttgata-----caatcccaacatactcatttctctgttaactctcgtaccgtttacattttattcgtttcctagtttatgaaacaaaacacattgaaatt 1216155  T
Q  678 ctatcacttggaac-aatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgat-acaaaaatat 753  Q
    |||||  || |||| |||||| |||||||||| |||||||||| ||| |||||| | || ||||||| ||||||||||    
T  1216154 ctatccattagaacaaatattaattgttgaacagcttgaatattgcactagtccatatgcagacgataacaaaaatat 1216077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 13510649 - 13510711
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| ||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  13510649 cacttagaataatattgattgttgaattgcttgaatatcgcgttagtccttgtggagacgata 13510711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 13600179 - 13600241
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| ||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  13600179 cacttagaataatattgattgttgaattgcttgaatatcgcgttagtccttgtggagacgata 13600241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 17993552 - 17993614
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||| | |||||||||||||    
T  17993552 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagttcctgtggagacgata 17993614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 22242711 - 22242653
Alignment:
Q  688 gaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    |||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||||    
T  22242711 gaacaatattgattgttgagtggcttgaatatcgcgctagtccatgtggagacgataca 22242653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 746
Target Start/End: Original strand, 21693150 - 21693198
Alignment:
Q  698 gattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  21693150 gattgttgaacggcttgaatgtcgcgctagtccttgtggagacgataca 21693198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 22226982 - 22226918
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||| |||| ||||| |||||| || ||||||||||||||| |||||| |||||||||||||||    
T  22226982 cacttagaacgatattaattgttaaatggcttgaatatcgcactagtccctgtggagacgataca 22226918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 22233324 - 22233260
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||| |||| ||||| |||||| || ||||||||||||||| |||||| |||||||||||||||    
T  22233324 cacttagaacgatattaattgttaaatggcttgaatatcgcactagtccctgtggagacgataca 22233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 4861427 - 4861365
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||||||||||||  |||||| ||| |||||||||    
T  4861427 cacttagaacaatattgattgttgaatgacttgaatatcgcgctagtccctgtagagacgata 4861365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 767
Target Start/End: Complemental strand, 4435178 - 4435102
Alignment:
Q  693 atattgattgttgaacggcttgaatatcgcattagtccttgtggagacgat--acaaaaatatttacctttgctact 767  Q
    |||| |||||||||||| ||||||||||||  || ||||||||||||||||  ||||||||| |||| |||| ||||    
T  4435178 atatcgattgttgaacgacttgaatatcgcgctaatccttgtggagacgatgcacaaaaatacttacttttgatact 4435102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 767
Target Start/End: Original strand, 2268566 - 2268637
Alignment:
Q  698 gattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttgctact 767  Q
    |||||||||||||||| |||||||||| |||||| | |||||||||| ||||||||| |||| |||| ||||    
T  2268566 gattgttgaacggcttagaatatcgcactagtccctatggagacgataacaaaaatacttacttttgatact 2268637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 9907113 - 9907188
Alignment:
Q  689 aacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttg 762  Q
    |||||||| ||||||||||||||||  |||||||||  ||||| |||||||||||| ||||||||| |||| ||||    
T  9907113 aacaatatcgattgttgaacggcttataatatcgcaccagtccatgtggagacgataacaaaaatacttacttttg 9907188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 12538849 - 12538911
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| |||| |||||||||  |||||  || ||||||||||    
T  12538849 cacttagaacaatattgattgttgaatggctggaatatcgcgctagtctctggggagacgata 12538911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 22222149 - 22222087
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||| |||||||||| ||||||||| |||||||||  |||  |||||| |||||||||||||||    
T  22222149 cacttagaacaatattaattgttgaatggcttgaatcgcgc--tagtccctgtggagacgataca 22222087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 22228491 - 22228429
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||| |||||||||| ||||||||| |||||||||  |||  |||||| |||||||||||||||    
T  22228491 cacttagaacaatattaattgttgaatggcttgaatcgcgc--tagtccctgtggagacgataca 22228429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 549 - 767
Target Start/End: Original strand, 24630268 - 24630486
Alignment:
Q  549 actaatcataataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatc 648  Q
    ||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| |  |||||||||| | ||||| |||||||| | | |||||| |     
T  24630268 actaatcataagaatacatgtgaaataggttgatgaagtttaatcccaacatactcacatctctgttaacttttgtatcatttacattgttatagtttta 24630367  T
Q  649 tagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgatacaaa 748  Q
    ||||||||||||  |||||  | | |||| ||||||||  ||  ||||  ||||||||||| ||| |||||| |  || |||||||||||| ||||||||    
T  24630368 tagcttatgaaatcaaacaccttacaattttatcacttaaaattatataaattgttgaacgactttaatatcacgctactccttgtggagatgatacaaa 24630467  T
Q  749 aatatttacctttgctact 767  Q
    ||||||||| |||| ||||    
T  24630468 aatatttacttttgatact 24630486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 698 - 746
Target Start/End: Complemental strand, 8847862 - 8847814
Alignment:
Q  698 gattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  8847862 gattgttgaacggcttgaatatcgcgctagtccttgtggagacgataca 8847814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 315 - 398
Target Start/End: Original strand, 24630073 - 24630156
Alignment:
Q  315 ttaaacactaaactctagaaatagattatgggtttaatattcacttaaaa-attgaatcttaatgctatcatattggttaatagg 398  Q
    |||||||||||| |||||| ||| ||||||||||||| ||||||| |||  |||||||||||||| | |||||||||||||||||    
T  24630073 ttaaacactaaattctagagata-attatgggtttaacattcactaaaagtattgaatcttaatgatgtcatattggttaatagg 24630156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 33110170 - 33110108
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| || |||||||||||  |||||| |||||||||||||    
T  33110170 cacttagaacaatattgattgttgaatggtttgaatatcgcgctagtccatgtggagacgata 33110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 762
Target Start/End: Original strand, 23543636 - 23543824
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| |||||||||||| | ||||  ||||||| |||   |   |||| | |||||||||| ||||| |||||||||||||| ||| |  |    
T  23543636 ggttgatgaagtttaatcccaacataatcattttcctgttaactctcaaatattttataatttcatagttttctagtttatgaaacaaaacttattacca 23543735  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttg 762  Q
     || || |||  ||||||||| |||||  ||||||||| ||||||||||  ||| | |||||||||||| ||| |||||||||| ||||    
T  23543736 ctccattactcagaacaatatagattgccgaacggcttagaatatcgcaccagttcctgtggagacgataacataaatatttacttttg 23543824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 53896065 - 53896127
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||| ||||||||||| | |||||||||||| ||||||| |||||| ||||||    
T  53896065 cacttagaacaatactgattgttgaatgacttgaatatcgcgttagtccgtgtggaaacgata 53896127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 739
Target Start/End: Complemental strand, 13568099 - 13567995
Alignment:
Q  636 tttcatagttatctagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgt 734  Q
    |||||||||| ||||| |||||||||||||| ||| |  | || || |||  |||||| || |||||||||||||||| ||||||||||  ||||| |||    
T  13568099 tttcatagttttctagtttatgaaacaaaacttattaccactccattactcagaacaacatagattgttgaacggcttagaatatcgcaccagtccctgt 13568000  T
Q  735 ggaga 739  Q
    |||||    
T  13567999 ggaga 13567995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 767
Target Start/End: Original strand, 667877 - 667958
Alignment:
Q  688 gaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgat-acaaaaatatttacctttgctact 767  Q
    |||| |||| |||||||||||||||| ||||||||||| ||||| | ||||||| || ||||||||| |||| |||| ||||    
T  667877 gaacgatatcgattgttgaacggcttagaatatcgcatcagtccctatggagacaataacaaaaatacttacttttgatact 667958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 275 - 415
Target Start/End: Complemental strand, 43102539 - 43102398
Alignment:
Q  275 attgacaaataccttt-gaatctagcttaggataatatctattaaacactaaactctagaaatagattatgggtttaatattcacttaaaa-attgaatc 372  Q
    ||||| |||||||||| |||||||| |||| ||||| |||||| ||  ||||| |||||||||||||| | ||||||||||||||| |||  ||||||||    
T  43102539 attgaaaaataccttttgaatctaggttagaataatgtctattgaattctaaattctagaaatagatt-taggtttaatattcactaaaagtattgaatc 43102441  T
Q  373 ttaatgctatcatattggttaataggctcacaaatcgtcgatt 415  Q
    ||||||||||| |||||||||||||||| | ||||||||||||    
T  43102440 ttaatgctatcctattggttaataggctgagaaatcgtcgatt 43102398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 36084443 - 36084505
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  36084443 cacttggaacaatattgattgttgaatggcttgaatatcgcgttagtccttgtagagacgata 36084505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 649 - 767
Target Start/End: Complemental strand, 19329429 - 19329310
Alignment:
Q  649 tagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata-caa 747  Q
    ||||||| || ||||||||| | | |||||||   ||| ||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||| |||    
T  19329429 tagcttacgatacaaaacatttgataattctaaagcttagaacaatatcgattgttgaacggcttgaatatcgcaccagtccctgtggagacgatagcaa 19329330  T
Q  748 aaatatttacctttgctact 767  Q
    ||||| |||| |||| ||||    
T  19329329 aaatacttacttttgatact 19329310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 549 - 709
Target Start/End: Original strand, 34521438 - 34521598
Alignment:
Q  549 actaatcataataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttaca-ctttcatagttat 647  Q
    ||||||||||| ||| ||| ||||||  ||||| |||||| |||||||||||||| || ||||| |||| || |||| ||||||||  |||  ||||| |    
T  34521438 actaatcataagaatgcatctgaaatatgttgacgaagttgaatcccaacatactcatatctctattaactc-tgtatcatttacattttttttagtttt 34521536  T
Q  648 ctagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacg 709  Q
     ||||||||||||| |||||  | | |||| |||||||| |||||||||| |||||||||||    
T  34521537 atagcttatgaaaccaaacaccttacaattttatcacttagaacaatattaattgttgaacg 34521598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 8995736 - 8995672
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgataca 746  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||||    
T  8995736 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctgtggagacgataca 8995672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 744
Target Start/End: Complemental strand, 21814945 - 21814778
Alignment:
Q  578 ttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaatt 677  Q
    ||||||||||| ||||||| |||| | ||||| ||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  | |    
T  21814945 ttgatgaagtttaatcccagcataatcatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattaccact 21814846  T
Q  678 ctatcacttggaacaatattgattgttgaacggc-ttgaatatcgcattagtccttgtggagacgata 744  Q
    | || |||  ||||||||| |||||||||||||| | ||||||||||  ||||| |||||||||||||    
T  21814845 ccattactcagaacaatatagattgttgaacggcgtagaatatcgcaccagtccctgtggagacgata 21814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 634
Target Start/End: Complemental strand, 44785649 - 44785497
Alignment:
Q  480 ttattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaatactaatcataataatacatatgaaatgggtt 579  Q
    ||||| |||||| || | |||||||||||||| |||||| |||||||  |||||||||||   ||||||| ||||||| | ||||||||| |  | ||||    
T  44785649 ttatttagacatgaataatgtttgccgagcaatacgtgaaaatatcg--tgataactagaatgtgcaatattaatcatgagaatacatataagttaggtt 44785552  T
Q  580 gatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttaca 634  Q
    ||||||||| ||||||| |||| | |||||  |||| | |||||| |||||||||    
T  44785551 gatgaagtttaatcccagcatattcatttccgtgtttactcttgtcccatttaca 44785497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 15162112 - 15162174
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||    
T  15162112 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctgtggagacgata 15162174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 576 - 744
Target Start/End: Complemental strand, 9316090 - 9315921
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| |||| || |||| | ||||| ||||||| |||   | | |||| | |||||||||| ||||| ||||||| |||||| ||| |  |    
T  9316090 ggttgatgaagtttaatctcagcataatcatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaccaaaacttattacca 9315991  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
     || || |||  |||| |||| |||||||||||| ||| ||||||||||| ||||| |||||||||||||    
T  9315990 ctcaattactcagaacgatatagattgttgaacgacttagaatatcgcatcagtccctgtggagacgata 9315921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 757
Target Start/End: Complemental strand, 44785480 - 44785396
Alignment:
Q  675 attctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgat--acaaaaatatttac 757  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| || |  |||||| ||||||||| ||  ||||||||||||||    
T  44785480 attctataacttagaacaatattgattgttgaacggcatgaatgtcacgctagtccctgtggagacaatacacaaaaatatttac 44785396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 9293100 - 9293162
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||||||||||||  |||||| | |||||||||||    
T  9293100 cacttagaacaatattgattgttgaatgacttgaatatcgcgctagtccctatggagacgata 9293162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 3365700 - 3365638
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||  ||||||||  |||||| |||||||||||||    
T  3365700 cacttagaacaatattgattgttgaatgactcaaatatcgcgctagtccctgtggagacgata 3365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 767
Target Start/End: Complemental strand, 13105447 - 13105140
Alignment:
Q  458 cgatatgatcgacctcacaacattattcagacataaacattgtttgccgagcaacacgtgagaatatcgagtgataactagatattgcaatactaatcat 557  Q
    ||||||||| || |||||||  ||||| |||||| || | |||||||||||||| |||||| |||||||  ||||||||| |   ||||||| |||||||    
T  13105447 cgatatgattgaactcacaagcttatttagacatgaataatgtttgccgagcaatacgtgaaaatatcg--tgataactacaatgtgcaatattaatcat 13105350  T
Q  558 aataatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatg 657  Q
     | |||||| || |  | ||| ||| ||| | |||||||||||| | ||||| || || | |||||| ||||||||| ||| ||||    |||||||| |    
T  13105349 gagaatacaaataagttaggtagataaagcttaatcccaacatattcatttccctatttaatcttgtcccatttacaattt-atagaccgctagcttacg 13105251  T
Q  658 aaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgat-acaaaaatattta 756  Q
    | ||||||||  | | ||||||||  ||| |||| |||||||||||||||| ||||||||||| ||  ||||| |||||||||||| ||||||||| |||    
T  13105250 atacaaaacacttgataattctatagcttagaacgatattgattgttgaacagcttgaatatcacaccagtccatgtggagacgataacaaaaatactta 13105151  T
Q  757 cctttgctact 767  Q
    | |||| ||||    
T  13105150 cttttgatact 13105140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 288 - 450
Target Start/End: Complemental strand, 13105578 - 13105416
Alignment:
Q  288 tttgaatctagcttaggataatatctattaaacactaaactctagaaatagattatgggtttaatattcacttaaaa-attgaatcttaatgctatcata 386  Q
    ||||||||||| |||| ||||| |||||| ||| ||||| |||||||||||||| | ||||| |||||||  ||||  |||||||||||||||||||||     
T  13105578 tttgaatctaggttagaataatgtctattgaactctaaattctagaaatagatt-taggtttgatattcatataaagtattgaatcttaatgctatcatc 13105480  T
Q  387 ttggttaataggctcacaaatcgtcgattgattgatatgatcgacctcacaatattatttagac 450  Q
    | ||| |||||| | | ||||||||||||||  |||||||| || |||||||  ||||||||||    
T  13105479 tcggtaaataggttgagaaatcgtcgattgaccgatatgattgaactcacaagcttatttagac 13105416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 744
Target Start/End: Complemental strand, 18765817 - 18765648
Alignment:
Q  576 ggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaa 675  Q
    ||||||||||||| ||||||| |||| ||||||| ||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  |    
T  18765817 ggttgatgaagtttaatcccagcataataatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattacca 18765718  T
Q  676 ttctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgtggagacgata 744  Q
     || || |||  ||||||||| |||||||||||||||| |||||||||| |||||| | |||||||||||    
T  18765717 ctccattactcagaacaatatagattgttgaacggcttagaatatcgcactagtccctatggagacgata 18765648  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 683 - 744
Target Start/End: Complemental strand, 9517920 - 9517859
Alignment:
Q  683 acttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  9517920 acttagaacaatattgattgttgaatggcttgaatatcgcgctagtccttgtggagacgata 9517859  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 739
Target Start/End: Original strand, 1455484 - 1455534
Alignment:
Q  689 aacaatattgattgttgaacggcttgaatatcgcattagtccttgtggaga 739  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  1455484 aacaatattgattgttgaatggcttgaatatcgcactagtccctgtggaga 1455534  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 739
Target Start/End: Original strand, 1467176 - 1467226
Alignment:
Q  689 aacaatattgattgttgaacggcttgaatatcgcattagtccttgtggaga 739  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  1467176 aacaatattgattgttgaatggcttgaatatcgcactagtccctgtggaga 1467226  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 25977635 - 25977697
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| | |||||||||||    
T  25977635 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctatggagacgata 25977697  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 34007142 - 34007204
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||  |||||||||||||    
T  34007142 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtctctgtggagacgata 34007204  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 34914374 - 34914437
Alignment:
Q  682 cacttggaacaatatt-gattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||| |||||||||| ||||||||||||||  |||||| |||||||||||||    
T  34914374 cacttagaacaatatttgattgttgaatggcttgaatatcgcgctagtccctgtggagacgata 34914437  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 14271358 - 14271420
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| | ||| ||||||||  |||||| |||||||||||||    
T  14271358 cacttagaacaatattgattgttgaatgacttaaatatcgcgctagtccctgtggagacgata 14271420  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 633
Target Start/End: Complemental strand, 24908570 - 24908499
Alignment:
Q  561 aatacatatgaaatgggttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttac 633  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||||| ||||||| ||| || ||||||||    
T  24908570 aatacatatgaa-taggttgatgaagtttaatcccaacataatcatttccctgttaactctcgtcccatttac 24908499  T

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Target: scaffold0291 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 636 - 757
Target Start/End: Original strand, 1866 - 1989
Alignment:
Q  636 tttcatagttatctagcttatgaaacaaaacatatcaaaattctatcacttggaacaatattgattgttgaacggctt-gaatatcgcattagtccttgt 734  Q
    |||||||||| ||||| |||||||||||||| ||| |  | || || |||  |||| |||| |||||||||||||||| ||||||||||  |||||||||    
T  1866 tttcatagttttctagtttatgaaacaaaacttattaccactccattactcagaacgatatagattgttgaacggcttagaatatcgcaccagtccttgt 1965  T
Q  735 ggagacgat-acaaaaatatttac 757  Q
    ||||||||| ||| ||||||||||    
T  1966 ggagacgataacataaatatttac 1989  T

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Target: scaffold0265 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 744
Target Start/End: Original strand, 17864 - 18031
Alignment:
Q  578 ttgatgaagttcaatcccaacatactaatttctctgttaattcttgtaccatttacactttcatagttatctagcttatgaaacaaaacatatcaaaatt 677  Q
    ||||||||||| ||||||| |||| | ||||| ||||||| |||   | | |||| | |||||||||| ||||| |||||||||||||| ||| |  | |    
T  17864 ttgatgaagtttaatcccagcataatcatttccctgttaactctcaaatcttttataatttcatagttttctagtttatgaaacaaaacttattaccact 17963  T
Q  678 ctatcacttggaacaatattgattgttgaacggc-ttgaatatcgcattagtccttgtggagacgata 744  Q
    | || |||  ||||||||| |||||||||||||| | ||||||||||  ||||| |||||||||||||    
T  17964 ccattactcagaacaatatagattgttgaacggcgtagaatatcgcaccagtccctgtggagacgata 18031  T

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Target: scaffold0515 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 7442 - 7504
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| | |||||||||||    
T  7442 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctctggagacgata 7504  T

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Target: scaffold0306 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 7452 - 7514
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| | |||||||||||    
T  7452 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctctggagacgata 7514  T

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Target: scaffold0160 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 34798 - 34736
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| ||||||||||| |||||||| ||||||||||||||  |||||| |||||||||||||    
T  34798 cacttagaacaatattgtttgttgaatggcttgaatatcgcgctagtccctgtggagacgata 34736  T

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Target: scaffold0152 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 25063 - 25125
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||| | |||||||||||    
T  25063 cacttagaacaatattgattgttgaatggcttgaatatcgcgctagtccctctggagacgata 25125  T

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Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 744
Target Start/End: Original strand, 14870 - 14932
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||||||||||||||||||| |  |||||||||||  |||||| |||||||||||||    
T  14870 cacttagaacaatattgattgttgaatgatttgaatatcgcgctagtccctgtggagacgata 14932  T

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Target: scaffold0859 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 740
Target Start/End: Complemental strand, 4820 - 4762
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagac 740  Q
    ||||| |||||||||||||||||||| | ||||||||| ||  |||||| |||||||||    
T  4820 cacttagaacaatattgattgttgaatgacttgaatattgcgctagtccctgtggagac 4762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 459 - 397
Alignment:
Q  682 cacttggaacaatattgattgttgaacggcttgaatatcgcattagtccttgtggagacgata 744  Q
    ||||| |||| |||||||||||| || ||||||||||||||  |||||| |||||| ||||||    
T  459 cacttagaaccatattgattgttcaatggcttgaatatcgcgctagtccctgtggaaacgata 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 450
Target Start/End: Original strand, 239404 - 239562
Alignment:
Q  292 aatctagcttaggataatatctattaaacactaaactctagaaatagattatgggtttaatattcacttaaaaattgaatcttaatgctatcatattggt 391  Q
    |||||||  |||||||| ||||||| |  |||||| |||| ||||||  | |||  |||||||||||| ||  ||||||||  |||||| || ||||| |    
T  239404 aatctagactaggataacatctattgagtactaaattctaaaaatagggtttggtcttaatattcactcaagtattgaatcacaatgctttcttattgat 239503  T
Q  392 taataggctcacaaatcgtcgattgattgatatgatcgacctcacaatattatttagac 450  Q
    ||||||||| | ||||||| |||| ||  ||| |||||| | |||||  ||||||||||    
T  239504 taataggctaagaaatcgttgattaatcaatacgatcgaacccacaacgttatttagac 239562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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