View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_10 (Length: 442)
Name: NF20809_low_10
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 36918200 - 36917778
Alignment:
| Q |
11 |
cacagactgaacaatttcgttacataaggtcaggcttgaaggacaaaataactcagactagttagttacaacacaacaggcagaagtaaatgaaagtaag |
110 |
Q |
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| T |
36918200 |
cacagactgaacaatttcgttacataaggtcaggcttgaaggacaaaataactcagactagttagttacaacacaacaggcagaagtaaatgaaagtaag |
36918101 |
T |
|
| Q |
111 |
gtcatgattgaggccacttgtcctaaaaaactgagtatttttcataagagtggccgttcatctctctgagtttccactttctttaggtacaaaactaccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918100 |
gtcatgattgaggccacttgtcctaaaaaactgagtatttttcataagagtggccgttcatctctctgagtttccactttctttaggtacaaaactaccc |
36918001 |
T |
|
| Q |
211 |
aaaattagcctattatcttcacatcatcatttaactgtccccaactagatgttgacatttcataacaaaactaaccccattctttaatttattgcaatca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918000 |
aaaattagcctattatcttcacatcatcatttaactgtccccaactagatgttgacatttcataacaaaactaaccccattctttaatttattgcaatca |
36917901 |
T |
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| Q |
311 |
tgttgtgccctagaactagaccaatatacatgtgctaattagtttcactaaatcttttattttaaccactcaatcataattaattcacacatttactatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36917900 |
tgttgtgccctagaactagaccaatatacatgtgctaattagtttcacaaaatc-tttattttagccactcaatcataattaattcacacatttactatt |
36917802 |
T |
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| Q |
411 |
ttaagtatgaatttcatctcactc |
434 |
Q |
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||||||| |||||||||||||||| |
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| T |
36917801 |
ttaagtaagaatttcatctcactc |
36917778 |
T |
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