View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_11 (Length: 417)
Name: NF20809_low_11
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 126 - 412
Target Start/End: Original strand, 11639810 - 11640096
Alignment:
| Q |
126 |
tggcagagagttcagtatcatttttattggacaagctaacatggttacttcaagaagaagtaaatctacaaagaggagtccgtgaagatgttcaatacat |
225 |
Q |
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| T |
11639810 |
tggcagacagttcagtatcatttttattggacaagctaacatggttacttcaagaggaagtaaatctacaaagaggagtccgtgaagatgttcaatacat |
11639909 |
T |
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| Q |
226 |
caaagacgaactcgaacgccacaaggccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagat |
325 |
Q |
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| T |
11639910 |
caaagacgaacttgaacgccacaagtccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagat |
11640009 |
T |
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| Q |
326 |
attgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttctcac |
412 |
Q |
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| T |
11640010 |
attgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatcac |
11640096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 126 - 404
Target Start/End: Original strand, 11621319 - 11621597
Alignment:
| Q |
126 |
tggcagagagttcagtatcatttttattggacaagctaacatggttacttcaagaagaagtaaatctacaaagaggagtccgtgaagatgttcaatacat |
225 |
Q |
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| T |
11621319 |
tggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacat |
11621418 |
T |
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| Q |
226 |
caaagacgaactcgaacgccacaaggccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagat |
325 |
Q |
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| T |
11621419 |
caacgacgaactcgaacgccacaaggccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtt |
11621518 |
T |
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| Q |
326 |
attgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatctt |
404 |
Q |
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| T |
11621519 |
attgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcagatctt |
11621597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 126 - 390
Target Start/End: Complemental strand, 11606254 - 11605990
Alignment:
| Q |
126 |
tggcagagagttcagtatcatttttattggacaagctaacatggttacttcaagaagaagtaaatctacaaagaggagtccgtgaagatgttcaatacat |
225 |
Q |
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||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |
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| T |
11606254 |
tggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacat |
11606155 |
T |
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| Q |
226 |
caaagacgaactcgaacgccacaaggccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagat |
325 |
Q |
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| T |
11606154 |
caaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaagggtaagagat |
11606055 |
T |
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| Q |
326 |
attgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaagg |
390 |
Q |
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| T |
11606054 |
attgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagg |
11605990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 11639703 - 11639749
Alignment:
| Q |
19 |
cagaaatcaaatcatcaattgtttgcaacttttaacatttcgagagc |
65 |
Q |
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| T |
11639703 |
cagaaatcaaatcatcaattgtttgcaacttttaacatttcgagagc |
11639749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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