View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20809_low_12 (Length: 417)
Name: NF20809_low_12
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_12 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 28873 - 29273
Alignment:
| Q |
1 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28873 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctctttcgatgcatcccactctaca |
28972 |
T |
|
| Q |
101 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
28973 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgacatgacatccagataatcccataattt |
29072 |
T |
|
| Q |
201 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
29172 |
T |
|
| Q |
301 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29173 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
29272 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
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|
| T |
29273 |
a |
29273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 275983 - 276383
Alignment:
| Q |
1 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
275983 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctaca |
276082 |
T |
|
| Q |
101 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
276083 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataattt |
276182 |
T |
|
| Q |
201 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276183 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
276282 |
T |
|
| Q |
301 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276283 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
276382 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
|
|
| T |
276383 |
a |
276383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 26396588 - 26396988
Alignment:
| Q |
1 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26396588 |
atattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctaca |
26396687 |
T |
|
| Q |
101 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26396688 |
acaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataattt |
26396787 |
T |
|
| Q |
201 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396788 |
caacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtatt |
26396887 |
T |
|
| Q |
301 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396888 |
aaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtca |
26396987 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
|
|
| T |
26396988 |
a |
26396988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 19219115 - 19219213
Alignment:
| Q |
13 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttc |
111 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||| ||| |||||| || | |||| ||| ||||||||||||||||||||||| ||||| |
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|
| T |
19219115 |
catcaatgaatgtctactaagatatccattaaactcaaataaatgacataaataatatatttcagcttttgatgcatcccactctacaacaaactcttc |
19219213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 19217236 - 19217305
Alignment:
| Q |
330 |
tatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
399 |
Q |
| |
|
|||||||||| | |||| |||||||||| ||| || || |||||||||||||| |||||||||||||| |
|
|
| T |
19217236 |
tatcttgcaaggaaactatatatttttcattaaactcctttaatgtagttttcttacctacatatttgtc |
19217305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 19216995 - 19217023
Alignment:
| Q |
83 |
gatgcatcccactctacaacaaattcttc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
19216995 |
gatgcatcccactctacaacaaattcttc |
19217023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 56109441 - 56109051
Alignment:
| Q |
11 |
gccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||| || || |||| ||| ||||| |||| |||||||||| ||| || | |
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|
| T |
56109441 |
gccatcaatgaatgtctacaaagatacccattatactcaaaaaagcgacatagacacgatatttccttcttcgagacatcacactctacaataaactcgt |
56109342 |
T |
|
| Q |
111 |
ccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaa |
210 |
Q |
| |
|
| | || ||||||||| |||||||||| || || |||| | || | |||| | | | |||||||||||||||| || ||||||||| || |
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|
| T |
56109341 |
catttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacggcatccagataatcccaaaacttcaacttgaaa |
56109242 |
T |
|
| Q |
211 |
ctttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagca |
310 |
Q |
| |
|
|| ||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||| ||||||||||| |
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|
| T |
56109241 |
tttcttgaagatttcatgtgtatatatcatcgacatttgcttctcaaaaggtgatggagtcctaagaacaggttgcttgtgccatgtcttaaaatcagct |
56109142 |
T |
|
| Q |
311 |
tgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaa |
401 |
Q |
| |
|
||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || |||||||||||||| | |||||||||||||| |
|
|
| T |
56109141 |
tgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtcaa |
56109051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 26015207 - 26014818
Alignment:
| Q |
11 |
gccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||| || || |||| ||| ||||| |||| ||||||| || ||| || | |
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|
| T |
26015207 |
gccatcaatgaatgtctacaaagatacccattatactcaaaaaagcgacatagacacgatatttccttcttcgagacatcacactctagaataaactcgt |
26015108 |
T |
|
| Q |
111 |
ccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaa |
210 |
Q |
| |
|
| | || ||||||||| |||||||||| || || |||| | || | |||| | | |||||||||||||||||| || ||||||||| || |
|
|
| T |
26015107 |
catttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacgacatccagataatcccaaaacttcaacttgaaa |
26015008 |
T |
|
| Q |
211 |
ctttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagca |
310 |
Q |
| |
|
|| |||| | || ||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||| |||| || |||||||| ||||||||||| |
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|
| T |
26015007 |
tttcttgacgattt-atgtgtatatatcctcgacatttgcttctcaaaaggtgatggagtcctaagaacacgttgcttgtgccatgtcttaaaatcagct |
26014909 |
T |
|
| Q |
311 |
tgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaa |
401 |
Q |
| |
|
||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || ||||| |||||||| | |||||||||||||| |
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|
| T |
26014908 |
tgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgttgttttcttacatacatatttgtcaa |
26014818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 6967547 - 6967484
Alignment:
| Q |
338 |
aaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaa |
401 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || |||||||||||||| | |||||||||||||| |
|
|
| T |
6967547 |
aaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtcaa |
6967484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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