View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_13 (Length: 415)
Name: NF20809_low_13
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Original strand, 32683478 - 32683878
Alignment:
| Q |
5 |
acacttttacacagtcaattctgaaaaataaaagatgttcagatcaataataaacaagctcctactcaatgacctcattgtcaacatcttaacgcatggt |
104 |
Q |
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| T |
32683478 |
acacttttacacagtcaattctgaaaaataaaagatgttcagatcaataataaacaagctcctactcaatgacctcattgtcaacatcttaacgcacgat |
32683577 |
T |
|
| Q |
105 |
tctcctggaaccagattcgtgaggctagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccctccgattt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32683578 |
tctcctggaaccagattcgtgaggctagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccctctgattt |
32683677 |
T |
|
| Q |
205 |
ttgaaattaaaacgatccctctatacgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttcnnnnnnngt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32683678 |
ttgaaattaaaacgatccctctatacgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttcaaaaaaagt |
32683777 |
T |
|
| Q |
305 |
gttaaaaataattcatattttagttgaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactcacaggttct |
404 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32683778 |
gttaaaaataattcatactttagttgaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactcacagggtct |
32683877 |
T |
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| Q |
405 |
g |
405 |
Q |
| |
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| T |
32683878 |
g |
32683878 |
T |
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