View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_14 (Length: 413)
Name: NF20809_low_14
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 32683265 - 32682886
Alignment:
| Q |
15 |
tcagtatagtcattatgaatgtaatggctaattctgatctgcaaggacatgtgttataagttattataactatataacacaacttcaaattatgtacgac |
114 |
Q |
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| T |
32683265 |
tcagtatagtcattatgaatgtaatggctaattctgatctgcaaggacatgtgttataagttattataattatataacacaacttcaaattatgtacgac |
32683166 |
T |
|
| Q |
115 |
acaagatcggagttagctgagtgcatgtttttgtgagaggaagttttcatggtcacaaaaccgtggtcacaagtcttgggaatactaacaaaagtagaat |
214 |
Q |
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| T |
32683165 |
acaagatcggagttagctgagtgcatgtttttgtgagaggaagttttcatggtcacaaaaccgtggtcacaagtcttgggaatactaacaaaagtagaat |
32683066 |
T |
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| Q |
215 |
taaaatgtagaattaattttttgattatttttgaaataattataagaataaaacgtataactaatcttttgtgagtatgctatttggcatagatgcgtcc |
314 |
Q |
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| T |
32683065 |
taaaatgtagaattaattttttgattatttttgaaataattataagaataaaacgtataactaatcttttgtgagtatgctatttggcatagatgcgtcc |
32682966 |
T |
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| Q |
315 |
tggtttgagaggagatgtacagttgacttttaagttaatcatcagttttgaacttttcatcatatattggttgactagat |
394 |
Q |
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| T |
32682965 |
tggtttgagaggagatgtacagttgacttttaagttaatcatcagttttgaacttttcatcatatattggttgactagat |
32682886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 21894585 - 21894505
Alignment:
| Q |
216 |
aaaatgtagaattaatttttt-gattatttttgaaataattataagaataaaacgtataactaatcttttgtgagtatgct |
295 |
Q |
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| T |
21894585 |
aaaatgtagaattaatttttttgattatttttgaaataattaaaagaataaaatgtatacttaatagtttgtgagtatgct |
21894505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 45419115 - 45419040
Alignment:
| Q |
216 |
aaaatgtagaattaattttttg-attatttttgaaataattataagaataaaacgtataactaatcttttgtgagt |
290 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||| || |||| |||||||||| |
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| T |
45419115 |
aaaatgtaaaattaattttttttattatttttgaaataattaaaagaataaaaagtagaattaatattttgtgagt |
45419040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 37781027 - 37781086
Alignment:
| Q |
224 |
gaattaattttttgattatttttgaaataattataagaataaaacgtataactaatctttt |
284 |
Q |
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| T |
37781027 |
gaattaatttttt-actatttttaaaataattaaaagaataaaatgtataactaatatttt |
37781086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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