View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_15 (Length: 405)
Name: NF20809_low_15
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 3 - 385
Target Start/End: Complemental strand, 38220527 - 38220145
Alignment:
| Q |
3 |
cagaacatgattgaaaggtaaacaaattcatcaagaaacacgcagtcgatgcacaataaaagttagatcaagatcagtcggttcacaaaatatacaaatt |
102 |
Q |
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| T |
38220527 |
cagaacatgattgcaaggtaaacaaattcatcaagaaacacgcagtcgatgcacaataaatgttagatcaagatcagtcagttcacaaaatatacaaatt |
38220428 |
T |
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| Q |
103 |
ttgannnnnnnnnnnnn-attaacatccaaaatacctagcttgaaatctaggaccgtccgatcttgaaccaacagtctatgtcgattgcgtgaatgtaga |
201 |
Q |
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| T |
38220427 |
ttgattttttttttttttattaaaatccaaaatacctagattgaaatctaggaccgtccgatcttgaaccaacagtctatgtcgattgcgtgaatgtaga |
38220328 |
T |
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| Q |
202 |
gtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaatctcgatttaactctgaaatgtaacactaatccagtgttgggtattatatagta |
301 |
Q |
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| T |
38220327 |
gtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaatctcgatttaactctgaaatgtaacactaatccaatgttgggtattatatagta |
38220228 |
T |
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| Q |
302 |
aagcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
385 |
Q |
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| T |
38220227 |
aagcaatatgga-tttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
38220145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 38243370 - 38243000
Alignment:
| Q |
8 |
catgattgaaaggtaaacaaattcatcaagaaacacgcagtcgatgca-caataaaagttagatcaagatcagtcggttcacaaaatatacaaattttga |
106 |
Q |
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| T |
38243370 |
catgattgcaaggtaaatgaattcatcaagaaacacacagtcaatgcatcaatgaatgttggatcaagaccagtcagttcacaaaatatacgaatattga |
38243271 |
T |
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| Q |
107 |
nnnnnnnnnnnnnattaacatccaaaatacctagcttgaaatctaggaccgtccgatctt-gaaccaacagtctatgtcgattgcgtgaatgtagagtct |
205 |
Q |
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| T |
38243270 |
ttattttg-----attaaaatccaaaataccgagcttgaaatctaggaccttctgatctttggtccaacagtctgtgctgattgcgtgaatgtagagtct |
38243176 |
T |
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| Q |
206 |
cgagattgcaaggaatccaaatttgtagtttgtttgtctcaatctcgatttaactctgaaatgtaacactaatccagtgttgggtattatatagtaaagc |
305 |
Q |
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| T |
38243175 |
ctcggctgctaggaatccaaattagtaatttatttgtctcaatctcgatttaactcttaaatgtaacactagcccattgttgggtatcatagtg---agc |
38243079 |
T |
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| Q |
306 |
aatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
385 |
Q |
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| T |
38243078 |
aacatgga-tttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgtt |
38243000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 38214187 - 38214134
Alignment:
| Q |
303 |
agcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccaca |
358 |
Q |
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| T |
38214187 |
agcaacatggatttt--ttgtttcaggttgagtatcaagttgaatcttgtaccaca |
38214134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 38238090 - 38238034
Alignment:
| Q |
320 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaat |
376 |
Q |
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| T |
38238090 |
ttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaat |
38238034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 38226556 - 38226486
Alignment:
| Q |
315 |
tttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
385 |
Q |
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|||| ||||||||| |||||||||||||||||| ||| |||| ||||||| || |||||||||||||| |
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| T |
38226556 |
tttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgtt |
38226486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 17454647 - 17454582
Alignment:
| Q |
320 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
385 |
Q |
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| T |
17454647 |
ttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggagggaaatggttgtgtt |
17454582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 17433568 - 17433503
Alignment:
| Q |
320 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgtt |
385 |
Q |
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||||||||| ||||||||||||||||||| |||| || | ||||| |||| | ||||||||||||| |
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| T |
17433568 |
ttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgtt |
17433503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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