View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_17 (Length: 378)
Name: NF20809_low_17
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 6146781 - 6146423
Alignment:
| Q |
1 |
tgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttatt |
100 |
Q |
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| T |
6146781 |
tgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttgactccaatgttgcaagttatt |
6146682 |
T |
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| Q |
101 |
gttgctgcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatggaagacttttggctc |
200 |
Q |
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| T |
6146681 |
gttgcagcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatggaagacttttggctc |
6146582 |
T |
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| Q |
201 |
ataccaagaaactcaagtaagtatttcattaatgattttaaattactattattcaaattg-aaaagnnnnnnnntatgtaggaaaagacgagtc-ttaca |
298 |
Q |
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| T |
6146581 |
ataccaagaaactcaagtaagtatttcattaatgattttagattactattattcaaattgaaaaaaaaaatatatatgtaggaaaagacgagtctttaca |
6146482 |
T |
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| Q |
299 |
atcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttt |
357 |
Q |
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| T |
6146481 |
atcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttt |
6146423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 23693855 - 23693730
Alignment:
| Q |
44 |
ttttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatc |
143 |
Q |
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||||||||||||||| |||||| ||| || |||||| ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
23693855 |
ttttatcgttatagggtaccaagtgggagtcctttgactccaatgttgcaagttcttgttgctgccttttctaaaaggaagcttccttatccttctaatc |
23693756 |
T |
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| Q |
144 |
caactcaattgtatgaagtttctaag |
169 |
Q |
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| T |
23693755 |
ctgatcaattgtatgaggtttctaag |
23693730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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