View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_18 (Length: 369)
Name: NF20809_low_18
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_18 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 111904 - 111682
Alignment:
| Q |
96 |
ggttgaaccacatccacattccgcttcagcttctccgccagatatggtacaatttcctttgcatctatcgttccttttaccgtcaccaaatccttccctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111904 |
ggttgaaccacatccacattccgcttcagcttctccgccagatatggtacaatttcctttgcatctatcgttccttttaccgtcaccaaatccttccctt |
111805 |
T |
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| Q |
196 |
catcacttgtcacagattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatatta |
295 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
111804 |
catcacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatatta |
111705 |
T |
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| Q |
296 |
acttaacaactaataaagaatac |
318 |
Q |
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||||||||||||||||||||||| |
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| T |
111704 |
acttaacaactaataaagaatac |
111682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 96 - 318
Target Start/End: Original strand, 41143407 - 41143629
Alignment:
| Q |
96 |
ggttgaaccacatccacattccgcttcagcttctccgccagatatggtacaatttcctttgcatctatcgttccttttaccgtcaccaaatccttccctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143407 |
ggttgaaccacatccacattccgcttcagcttctccgccagatatggtacaatttcctttgcatctatcgttccttttaccgtcaccaaatccttccctt |
41143506 |
T |
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| Q |
196 |
catcacttgtcacagattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatatta |
295 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41143507 |
catcacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatatta |
41143606 |
T |
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| Q |
296 |
acttaacaactaataaagaatac |
318 |
Q |
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||||||||||||||||||||||| |
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| T |
41143607 |
acttaacaactaataaagaatac |
41143629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 1654879 - 1654811
Alignment:
| Q |
96 |
ggttgaaccacatccacattccgcttcagcttctccgccagatatggtacaatttcctttgcatctatc |
164 |
Q |
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||||||||||| | |||||| || ||| ||||||||||| || ||||||||||||||| ||||||||| |
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| T |
1654879 |
ggttgaaccaccttcacatttcgtatcaccttctccgccatatctggtacaatttccttcgcatctatc |
1654811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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