View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_2 (Length: 674)

Name: NF20809_low_2
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_2
NF20809_low_2
[»] chr1 (9 HSPs)
chr1 (18-674)||(33017756-33018414)
chr1 (92-177)||(33018282-33018367)
chr1 (132-178)||(15343026-15343072)
chr1 (132-177)||(39748633-39748678)
chr1 (492-538)||(32986362-32986408)
chr1 (137-178)||(8971322-8971363)
chr1 (512-573)||(30641779-30641840)
chr1 (129-178)||(38040289-38040338)
chr1 (142-178)||(26760272-26760308)
[»] chr5 (5 HSPs)
chr5 (122-177)||(34297188-34297243)
chr5 (129-178)||(14913192-14913241)
chr5 (137-178)||(21488296-21488337)
chr5 (132-187)||(36286063-36286118)
chr5 (142-178)||(29299370-29299406)
[»] chr4 (5 HSPs)
chr4 (129-187)||(50121523-50121581)
chr4 (129-178)||(42670850-42670899)
chr4 (132-178)||(43117943-43117989)
chr4 (129-178)||(16412247-16412296)
chr4 (129-178)||(31977757-31977806)
[»] chr2 (10 HSPs)
chr2 (465-559)||(15403641-15403735)
chr2 (129-178)||(28494790-28494839)
chr2 (129-177)||(33824364-33824412)
chr2 (132-178)||(5559602-5559648)
chr2 (132-178)||(32457226-32457272)
chr2 (129-178)||(35728477-35728527)
chr2 (142-186)||(29169840-29169885)
chr2 (137-178)||(30758733-30758774)
chr2 (129-177)||(7943453-7943501)
chr2 (129-177)||(29169921-29169969)
[»] chr7 (4 HSPs)
chr7 (132-176)||(2610202-2610246)
chr7 (132-178)||(8566170-8566216)
chr7 (581-631)||(31410878-31410928)
chr7 (129-178)||(11668028-11668077)
[»] chr6 (4 HSPs)
chr6 (132-176)||(12450440-12450484)
chr6 (132-177)||(9077675-9077720)
chr6 (144-177)||(17265822-17265855)
chr6 (129-177)||(30895270-30895318)
[»] chr3 (5 HSPs)
chr3 (511-566)||(49532574-49532629)
chr3 (132-178)||(9197094-9197140)
chr3 (132-178)||(50354325-50354371)
chr3 (129-178)||(13622500-13622549)
chr3 (129-178)||(43448971-43449020)
[»] chr8 (8 HSPs)
chr8 (132-178)||(8793808-8793854)
chr8 (132-178)||(40483296-40483342)
chr8 (132-178)||(43332650-43332696)
chr8 (132-177)||(3236419-3236464)
chr8 (129-178)||(8453680-8453729)
chr8 (129-178)||(16448802-16448851)
chr8 (142-174)||(9550126-9550158)
chr8 (150-178)||(15726773-15726801)


Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Complemental strand, 33018414 - 33017756
Alignment:
Q  18 taaagcagaatatagattcagttattacactttaccccctttggtcatatttataaaaaatatttgannnnnnnaattcattgaataattgatgcatata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||     
T  33018414 taaagcagaatatagattcagttattacactttaccccctttgatcatatttataaaaaatatttgatttttttaattcattgaataattgatgcatatg 33018315  T
Q  118 atctgatcatttatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatagcattagaggaggtagtaatcaaggagaaaagtcaaagca 217  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  33018314 atcagatcatttacatcaattatgcaatgaatttaaaaaatcaaatgtttcttataaatagcatcagaggagatagtaattaaggagaaaagtcaaagca 33018215  T
Q  218 ttaaataaaacatac--agagaaatgattttgtaccaatcactctccctactttttcttcttcacctcctctgacccaagaagttcctccaatatcttat 315  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018214 ttaaataaaacatactcagagaaatgattttgtactaatcactctccctactttttcttcttcacctcctctgacccaagaagttcctccaatatcttat 33018115  T
Q  316 catccaaacactcaaactcaaaaatgggcctatgctgtggcccagaagaactaccaccagcatgatgagatgatgaagaggtgtagggtggtggtgctaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018114 catccaaacactcaaactcaaaaatgggcctatgctgtggcccagaagaactaccaccagcatgatgagatgatgaagaggtgtagggtggtggtgctaa 33018015  T
Q  416 atgaggtggatatggtggtgaccctcttagtttagaataatactcactaggaaaatttaaaattgcaagatgacccctcaaattaaaagctgctcgatca 515  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018014 atgaggtggatatggtggtgaccctcttattttagaataatactcactaggaaaatttaaaattgcaagatgacccctcaaattaaaagctgctcgatca 33017915  T
Q  516 taagctcttgctgcttcttcagccgtatcaaatgtccctaaccacatccttgtcccttgcttagatggatcccttatctccgccgcgtacttcccccatg 615  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33017914 taagcccttgctgcttcttcagccgtatcaaatgtccctaaccacatccttgtcccttgcttagatggatcccttatctccgccgcgtacttcccccacg 33017815  T
Q  616 gcctcctcctcacgcctcggaaccgaacctcttcctttcccttctcctcctttccatgc 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33017814 gcctcctcctcacgcctcggaaccgaacctcttcctttcccttctcctcctttccatgc 33017756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 33018282 - 33018367
Alignment:
Q  92 aattcattgaataattgatgcatataatctgatcatttatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    ||||||||| |||||||||| | || |||||||||| |  ||||||||| ||||||||| |||||||||||||||| |||||||||    
T  33018282 aattcattgcataattgatgtaaatgatctgatcatatgcatcaattattcaatgaattaaaaaaatcaaatattttttataaata 33018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 15343026 - 15343072
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||    
T  15343026 atcatttatgcaatgaatcaaaaaaatcaaatatttcttataaatag 15343072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 39748678 - 39748633
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||    
T  39748678 atcatttatgcaatgaattaaaaaagtcaaatatttcttataaata 39748633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 32986408 - 32986362
Alignment:
Q  492 ctcaaattaaaagctgctcgatcataagctcttgctgcttcttcagc 538  Q
    |||| ||||||||| |||| ||||||||||||||| |||||||||||    
T  32986408 ctcatattaaaagcagctctatcataagctcttgcagcttcttcagc 32986362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 8971322 - 8971363
Alignment:
Q  137 ttatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||||  ||||| |||||||||||||||||||||    
T  8971322 ttatgcaatgaatcaaaaaagtcaaatatttcttataaatag 8971363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 30641840 - 30641779
Alignment:
Q  512 atcataagctcttgctgcttcttcagccgtatcaaatgtccctaaccacatccttgtccctt 573  Q
    ||||||||||||||| |||| |||||| ||||||||||| || | ||| || ||||||||||    
T  30641840 atcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattcttgtccctt 30641779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 38040338 - 38040289
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||||  ||||| |||||| ||||||||||||||    
T  38040338 tatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatag 38040289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 26760272 - 26760308
Alignment:
Q  142 caatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||||||||||| | ||||||||||||||    
T  26760272 caatgaatttaaaaaatcaattttttcttataaatag 26760308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 34297243 - 34297188
Alignment:
Q  122 gatcatttatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    ||||| ||| |||| |||||||||||||| ||||| ||||||||||||||||||||    
T  34297243 gatcaattacatcatttatgcaatgaattaaaaaagtcaaatatttcttataaata 34297188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 14913192 - 14913241
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||||||||    
T  14913192 tatattaattactcaatgaatttaaaaaatcaaatttttcttataaatag 14913241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 21488337 - 21488296
Alignment:
Q  137 ttatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  21488337 ttatgcaatgaattaaaaaagtcaaatatttcttataaatag 21488296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 36286118 - 36286063
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatagcattagagg 187  Q
    |||| |||||||||||||  |||||||||| |||||||||||||||| ||| ||||    
T  36286118 atcatttatgcaatgaatcaaaaaaatcaagtatttcttataaatagaattggagg 36286063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 29299406 - 29299370
Alignment:
Q  142 caatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  29299406 caatgaatctaaaaaatcaaatttttcttataaatag 29299370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 50121523 - 50121581
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatagcattagagg 187  Q
    ||||||| |||||||||||||| ||||| |||||| |||||||||||||| | ||||||    
T  50121523 tatatcatttatgcaatgaattaaaaaagtcaaatgtttcttataaataggactagagg 50121581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 42670850 - 42670899
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  42670850 tatatcatttatgcaatgaatctaaaaagtcaaatgtttcttataaatag 42670899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 43117943 - 43117989
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||||| |||||||| ||||||||||| | ||||||||||||||    
T  43117943 atcaattattcaatgaatgtaaaaaatcaattttttcttataaatag 43117989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 16412296 - 16412247
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||| |||||||| |||||| |||| | ||||||||||||||    
T  16412296 tatatcaattattcaatgaatctaaaaagtcaattttttcttataaatag 16412247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 31977806 - 31977757
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||| | ||||  |||||||||||||||||||||||||||    
T  31977806 tatatcatttatgctaggaataaaaaaaatcaaatatttcttataaatag 31977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 559
Target Start/End: Complemental strand, 15403735 - 15403641
Alignment:
Q  465 ggaaaatttaaaattgcaagatgacccctcaaattaaaagctgctcgatcataagctcttgctgcttcttcagccgtatcaaatgtccctaacca 559  Q
    |||||||| | ||| ||||||  ||||||||||  || |||| | | |||||||||||| |||||||||||||| || |||||||| ||||||||    
T  15403735 ggaaaattaagaatggcaagagcacccctcaaacgaatagcttcacaatcataagctctagctgcttcttcagctgtgtcaaatgtacctaacca 15403641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 28494790 - 28494839
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||||  |||||||||||| ||||||||||||||    
T  28494790 tatatcatttatgcaatgaatcaaaaaaatcaaatgtttcttataaatag 28494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 33824412 - 33824364
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  33824412 tatatcaattactcaatgaatttaaaaagtcaaatttttcttataaata 33824364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 5559602 - 5559648
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||||    
T  5559602 atcatttatgcaatgaatcaaaaaaatcaaatatgtcttataaatag 5559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 32457272 - 32457226
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||||    
T  32457272 atcatttatgcaatgaatcaaaaaagtcaaatatttcttataaatag 32457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 35728527 - 35728477
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaa-atcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||||  ||||| ||||||||||||||||||||||    
T  35728527 tatatcatttatgcaatgaatcaaaaaagatcaaatatttcttataaatag 35728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 29169885 - 29169840
Alignment:
Q  142 caatgaatttaaaaaa-tcaaatatttcttataaatagcattagag 186  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||    
T  29169885 caatgaattaaaaaaagtcaaatatttcttataaatagcatcagag 29169840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 30758774 - 30758733
Alignment:
Q  137 ttatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||||  ||||| |||||||||||||||||||||    
T  30758774 ttatgcaatgaataaaaaaagtcaaatatttcttataaatag 30758733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 7943501 - 7943453
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    ||||||| |||||||||||||  ||||| |||||||| |||||||||||    
T  7943501 tatatcatttatgcaatgaataaaaaaagtcaaatatctcttataaata 7943453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 29169921 - 29169969
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||||||||||  |||| |||||||||| |||||| |||||||||||||    
T  29169921 tatatcaattactcaataaatttaaaaagtcaaatttttcttataaata 29169969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 2610246 - 2610202
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaat 176  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||    
T  2610246 atcaattactcaatgaatttaaaaaatcaaatttttcttataaat 2610202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 8566170 - 8566216
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  8566170 atcaattactcaatgaatctaaaaaatcaaatttttcttataaatag 8566216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 631
Target Start/End: Complemental strand, 31410928 - 31410878
Alignment:
Q  581 tggatcccttatctccgccgcgtacttcccccatggcctcctcctcacgcc 631  Q
    |||||| |||||||| |||||| |||||||||||||||| | |||||||||    
T  31410928 tggatctcttatctctgccgcgaacttcccccatggcctacgcctcacgcc 31410878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 11668077 - 11668028
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||||  ||||| |||||| ||||||||||||||    
T  11668077 tatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatag 11668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 12450440 - 12450484
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaat 176  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||    
T  12450440 atcatttatgcaatgaattaaaaaagtcaaatatttcttataaat 12450484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 9077675 - 9077720
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||    
T  9077675 atcatttatgcaatgaatcaaaaaagtcaaatatttcttataaata 9077720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 17265822 - 17265855
Alignment:
Q  144 atgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||||||||||||||||||| |||||||||||||    
T  17265822 atgaatttaaaaaatcaaatttttcttataaata 17265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 30895270 - 30895318
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    ||||||| |||||||||||||  ||||| |||||| |||||||||||||    
T  30895270 tatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaata 30895318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 566
Target Start/End: Complemental strand, 49532629 - 49532574
Alignment:
Q  511 gatcataagctcttgctgcttcttcagccgtatcaaatgtccctaaccacatcctt 566  Q
    ||||||| |||||||||||| |||| ||||| |||||||| |||||||||| ||||    
T  49532629 gatcatatgctcttgctgctgcttctgccgtctcaaatgttcctaaccacaccctt 49532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 9197140 - 9197094
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||||    
T  9197140 atcatttatgcaatgaatcaaaaaagtcaaatatttcttataaatag 9197094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 50354325 - 50354371
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  |||||||||||||||| ||||||||||    
T  50354325 atcatttatgcaatgaatcaaaaaaatcaaatattttttataaatag 50354371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 13622549 - 13622500
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||| | ||||| |||||| ||||||||||||||    
T  13622549 tatatcatttatgcaatgaactaaaaaagtcaaatgtttcttataaatag 13622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 43449020 - 43448971
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||  |||||||| ||||||||||| | ||||||||||||||    
T  43449020 tatatcaattactcaatgaatctaaaaaatcaactttttcttataaatag 43448971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 8793808 - 8793854
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||||    
T  8793808 atcatttatgcaatgaatcaaaaaagtcaaatatttcttataaatag 8793854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 40483342 - 40483296
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||| ||||| | |||||||||||||||||||    
T  40483342 atcatttatgcaatgaattaaaaaagttaaatatttcttataaatag 40483296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 43332650 - 43332696
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||| |||||||||||||  |||||||||||||||| ||||||||||    
T  43332650 atcatttatgcaatgaatcaaaaaaatcaaatattttttataaatag 43332696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 3236419 - 3236464
Alignment:
Q  132 atcaattatgcaatgaatttaaaaaatcaaatatttcttataaata 177  Q
    |||| |||| ||||||||| ||||| ||||||||||||||||||||    
T  3236419 atcatttatacaatgaattaaaaaagtcaaatatttcttataaata 3236464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 8453680 - 8453729
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||  ||||| || ||||||||||||| ||||||||||||||    
T  8453680 tatatcaattactcaatgtatctaaaaaatcaaatttttcttataaatag 8453729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 16448851 - 16448802
Alignment:
Q  129 tatatcaattatgcaatgaatttaaaaaatcaaatatttcttataaatag 178  Q
    ||||||| |||||||||||||  ||||| |||||| ||||||||||||||    
T  16448851 tatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatag 16448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 9550158 - 9550126
Alignment:
Q  142 caatgaatttaaaaaatcaaatatttcttataa 174  Q
    |||||||||||||||||||| ||||||||||||    
T  9550158 caatgaatttaaaaaatcaattatttcttataa 9550126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 15726801 - 15726773
Alignment:
Q  150 ttaaaaaatcaaatatttcttataaatag 178  Q
    |||||||||||||||||||||||||||||    
T  15726801 ttaaaaaatcaaatatttcttataaatag 15726773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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