View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_21 (Length: 333)

Name: NF20809_low_21
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_21
NF20809_low_21
[»] chr1 (10 HSPs)
chr1 (18-324)||(32600227-32600533)
chr1 (110-324)||(32631340-32631554)
chr1 (110-324)||(32657232-32657446)
chr1 (110-324)||(32582094-32582308)
chr1 (18-87)||(32631921-32631990)
chr1 (18-87)||(32657813-32657882)
chr1 (18-86)||(32582682-32582750)
chr1 (56-111)||(32582621-32582676)
chr1 (56-111)||(32657753-32657808)
chr1 (56-111)||(32631861-32631916)
[»] scaffold0259 (1 HSPs)
scaffold0259 (110-324)||(21430-21644)
[»] chr8 (4 HSPs)
chr8 (110-316)||(41171989-41172195)
chr8 (110-324)||(41147100-41147314)
chr8 (110-314)||(41163874-41164078)
chr8 (16-66)||(41147636-41147686)
[»] chr6 (1 HSPs)
chr6 (110-324)||(26404715-26404927)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 32600533 - 32600227
Alignment:
Q  18 tggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtgacggaagagaaaaaatatgacccattcacttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32600533 tggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtgacggaagagaaaaaatatgacccattcacttc 32600434  T
Q  118 aatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagttactttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32600433 aatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaattctttttggaacaatccatccagttactttca 32600334  T
Q  218 aaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32600333 aaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagt 32600234  T
Q  318 gatgatg 324  Q
    |||||||    
T  32600233 gatgatg 32600227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 32631554 - 32631340
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32631554 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 32631455  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32631454 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 32631355  T
Q  310 ttgacagtgatgatg 324  Q
    |||||||||||||||    
T  32631354 ttgacagtgatgatg 32631340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 32657446 - 32657232
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32657446 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 32657347  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32657346 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 32657247  T
Q  310 ttgacagtgatgatg 324  Q
    |||||||||||||||    
T  32657246 ttgacagtgatgatg 32657232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 32582308 - 32582094
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32582308 ttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccgtccagt 32582209  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32582208 tactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggagactg 32582109  T
Q  310 ttgacagtgatgatg 324  Q
    || ||||||||||||    
T  32582108 tttacagtgatgatg 32582094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 32631990 - 32631921
Alignment:
Q  18 tggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtgac 87  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||    
T  32631990 tggagaaaacaactggcaaaccagacgtcatgatcaagaagaaaaaatcaacttccaaagcagctgtgac 32631921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 32657882 - 32657813
Alignment:
Q  18 tggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtgac 87  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  32657882 tggagaaaacaactagcaaaccagatgtcatgatcaagaagaaaaaatcaacttccaaagcagctgtgac 32657813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 32582750 - 32582682
Alignment:
Q  18 tggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtga 86  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||| ||||||||||    
T  32582750 tggagaaaacaactggcaaaccagatatcgtgatcaacaagaaaaaaccaactaccaaagcagctgtga 32582682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 32582676 - 32582621
Alignment:
Q  56 aagaaaaaatcaactgccaatgcagctgtgacggaagagaaaaaatatgacccatt 111  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32582676 aagaaaaaatcaactgccaatgcagctgggactgaagagaaaaaatatgacccatt 32582621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 32657808 - 32657753
Alignment:
Q  56 aagaaaaaatcaactgccaatgcagctgtgacggaagagaaaaaatatgacccatt 111  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32657808 aagaaaatatcaactgccaaagcagctgtgactgaagagaaaaaatatgacccatt 32657753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 32631916 - 32631861
Alignment:
Q  56 aagaaaaaatcaactgccaatgcagctgtgacggaagagaaaaaatatgacccatt 111  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  32631916 aagaaaatatcaactgccaaagcagctgtgactgaagagaaaaaatacgacccatt 32631861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 21644 - 21430
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||    
T  21644 ttcacatcaatggacaggtgattaagaaaagagatttaaggttataatgagtctaaaaatcccctcccaaaataattctttttgcaacaatccatcaagt 21545  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||| |    
T  21544 tactttcaaaagagggcaagaaaagacatgctgagttattacttcaatgtatatcttattcaactaagaagctatcagaatcaagtgacttcaaggaccg 21445  T
Q  310 ttgacagtgatgatg 324  Q
    |||| ||||||||||    
T  21444 ttgatagtgatgatg 21430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 110 - 316
Target Start/End: Complemental strand, 41172195 - 41171989
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    |||||||| |||||||| |||||||||||||||||||||||||  ||||||  ||||| |||||||||||||||||||||||||||||||||| |||||     
T  41172195 ttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaatgaggttaaaattcccctcccaaaacaagtctttttggaacaatccttccaga 41172096  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  41172095 tactttcgaaacaagacaagaaaagacatggtgagctattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgaccccgaagactg 41171996  T
Q  310 ttgacag 316  Q
    |||||||    
T  41171995 ttgacag 41171989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 41147314 - 41147100
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    |||||||| |||||||| |||||||||||||||||||||||||  |||  || ||||||||||||| ||||||||||||||||||||||||||||||||     
T  41147314 ttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaataggtttaaaaatcccctctcaaaacaagtctttttggaacaatccatccaga 41147215  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    | ||||| || || ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |  |||    
T  41147214 tgctttcgaaggaagacaagaaaagacttggtgagctattacttcaatgtatattttattcaactaagaagctatcagaatcgagtgactccgaatgctg 41147115  T
Q  310 ttgacagtgatgatg 324  Q
    |||||||||||||||    
T  41147114 ttgacagtgatgatg 41147100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 110 - 314
Target Start/End: Complemental strand, 41164078 - 41163874
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    |||||||| |||||||| |||||||||||||||||||||||||   |||||  |||||||||| ||||||||||||||||||||||||||||||||||      
T  41164078 ttcacttcgatggacagctgatgaagaaaagagatttaaggatgcgatgaggttaaaaatcccttcccaaaacaagtctttttggaacaatccatccata 41163979  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    ||||||| || || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| | || ||||||    
T  41163978 tactttcgaaggaagacaagaaaagacatggtgagctattgcttcaatgtatatcttattcaactaagaagctatcggaatcgagtgaatccgaagactg 41163879  T
Q  310 ttgac 314  Q
    |||||    
T  41163878 ttgac 41163874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 41147686 - 41147636
Alignment:
Q  16 tctggagaaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatc 66  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  41147686 tctggaaaaaacaactggcaaaccagatgtcgtgatcaaaaagaaaaaatc 41147636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 26404927 - 26404715
Alignment:
Q  110 ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagt 209  Q
    ||||||||||||||||  |||||||||||||||||||||||||  |||||   ||||||| ||||| |||| |||||| | |||||| |||||||| ||     
T  26404927 ttcacttcaatggacatctgatgaagaaaagagatttaaggatgcaatgaagttaaaaattccctctcaaagcaagtcatattggaaaaatccatctaga 26404828  T
Q  210 tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg 309  Q
    | |||||||| ||   |||||||||||  |||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||||||| || | ||||    
T  26404827 tgctttcaaaggaatgcaagaaaagac--ggtgagctattacttcaatgtatatcttattcaactaagaatctatcaaaatcgagtgactccgaacactg 26404730  T
Q  310 ttgacagtgatgatg 324  Q
    |||||| ||| ||||    
T  26404729 ttgacaatgacgatg 26404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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