View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_22 (Length: 330)

Name: NF20809_low_22
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_22
NF20809_low_22
[»] chr6 (6 HSPs)
chr6 (45-324)||(13203911-13204190)
chr6 (208-291)||(13405251-13405334)
chr6 (208-292)||(7536644-7536728)
chr6 (223-292)||(31968879-31968948)
chr6 (208-292)||(1397993-1398077)
chr6 (210-292)||(7524047-7524129)
[»] chr2 (8 HSPs)
chr2 (208-304)||(31643486-31643582)
chr2 (208-292)||(29035287-29035371)
chr2 (208-291)||(29141819-29141902)
chr2 (194-235)||(11482971-11483012)
chr2 (208-291)||(17525945-17526029)
chr2 (212-244)||(18486112-18486144)
chr2 (208-244)||(27640788-27640824)
chr2 (208-244)||(40897603-40897639)
[»] chr7 (13 HSPs)
chr7 (210-292)||(22499669-22499751)
chr7 (208-307)||(29502004-29502103)
chr7 (211-275)||(24779545-24779609)
chr7 (208-292)||(30781197-30781281)
chr7 (212-275)||(9014590-9014653)
chr7 (207-269)||(9021610-9021672)
chr7 (208-292)||(8727909-8727993)
chr7 (208-305)||(16649471-16649568)
chr7 (208-305)||(17623832-17623929)
chr7 (208-292)||(6961219-6961302)
chr7 (208-275)||(40883468-40883535)
chr7 (208-289)||(4248808-4248889)
chr7 (223-292)||(28755007-28755076)
[»] chr4 (14 HSPs)
chr4 (208-292)||(36801748-36801832)
chr4 (208-292)||(5734223-5734307)
chr4 (208-290)||(10394010-10394092)
chr4 (208-274)||(7776956-7777022)
chr4 (208-269)||(15632320-15632381)
chr4 (208-306)||(7638632-7638729)
chr4 (208-254)||(13869329-13869375)
chr4 (208-289)||(133537-133618)
chr4 (223-292)||(18669134-18669203)
chr4 (203-269)||(2763036-2763102)
chr4 (208-254)||(13857799-13857845)
chr4 (223-292)||(18707882-18707951)
chr4 (223-292)||(18735385-18735454)
chr4 (203-267)||(9046008-9046072)
[»] chr8 (9 HSPs)
chr8 (208-307)||(36108956-36109055)
chr8 (208-307)||(8996534-8996632)
chr8 (209-292)||(25382926-25383009)
chr8 (209-275)||(25642637-25642703)
chr8 (223-307)||(32017848-32017932)
chr8 (208-303)||(11635947-11636042)
chr8 (208-303)||(8995158-8995253)
chr8 (208-307)||(17836615-17836716)
chr8 (208-245)||(7413332-7413369)
[»] chr3 (6 HSPs)
chr3 (208-292)||(18658004-18658088)
chr3 (208-268)||(2619071-2619131)
chr3 (208-292)||(31174447-31174531)
chr3 (223-304)||(576340-576421)
chr3 (208-240)||(4618335-4618367)
chr3 (208-244)||(25807145-25807181)
[»] chr1 (11 HSPs)
chr1 (208-292)||(21852188-21852272)
chr1 (208-283)||(9246796-9246871)
chr1 (208-292)||(46601189-46601273)
chr1 (208-267)||(18113676-18113735)
chr1 (208-275)||(25030439-25030506)
chr1 (202-253)||(42225483-42225534)
chr1 (208-263)||(45807202-45807257)
chr1 (208-245)||(44317753-44317790)
chr1 (208-245)||(49001415-49001452)
chr1 (208-244)||(15083901-15083937)
chr1 (213-245)||(24790741-24790773)
[»] chr5 (12 HSPs)
chr5 (208-292)||(20117663-20117747)
chr5 (208-307)||(37042425-37042523)
chr5 (208-292)||(5930015-5930099)
chr5 (243-307)||(30062586-30062650)
chr5 (208-292)||(43361243-43361327)
chr5 (210-269)||(20071066-20071125)
chr5 (208-307)||(22578806-22578905)
chr5 (210-292)||(41817642-41817724)
chr5 (212-275)||(19577084-19577147)
chr5 (211-274)||(38705464-38705527)
chr5 (211-253)||(17701356-17701398)
chr5 (212-245)||(26785134-26785167)
[»] scaffold0003 (1 HSPs)
scaffold0003 (210-269)||(303671-303730)
[»] scaffold0041 (1 HSPs)
scaffold0041 (208-275)||(82749-82816)
[»] scaffold0778 (1 HSPs)
scaffold0778 (203-235)||(1451-1483)
[»] scaffold0028 (1 HSPs)
scaffold0028 (211-283)||(33675-33747)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 45 - 324
Target Start/End: Original strand, 13203911 - 13204190
Alignment:
Q  45 aacttcttaaatgtttatgtccaccattgagtgtcctcctttttgttatgtcatattatgtgaaaaatttcaaattttgtcaacaaccctagtatcattc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13203911 aacttcttaaatgtttatgtccaccattgagtgtcctcctttttgttatgtcatattatgtgaaaaatttcaaattttgtcaacaaccctagtatcattc 13204010  T
Q  145 ggtggcagagcctttcatgggttagggtgggcccggnnnnnnnnnnnnnttaacgaccatatttctattttgcgagattttaaacaatttttcaatggtt 244  Q
    |||||| |||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13204011 ggtggcggagcctttcatgggttagggtgggcccggaaaaattaaaaaattaacgaccatatttctattttgctagattttaaacaatttttcaatggtt 13204110  T
Q  245 ataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtttattacaactttaattt 324  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  13204111 atagttttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcatacttggcatgtttattaaaactttaattt 13204190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 13405334 - 13405251
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgc 291  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||| ||||||| ||||||| |||||||| |||| |||||||    
T  13405334 tctattttgcgagattttaaacaatttttcaacagttttaattttcggcggttttaaaagtgacatacgtgatttttgtgatgc 13405251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 7536644 - 7536728
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||  ||| ||| |||| ||||||||    
T  7536644 tctattttgtgagactttaaacaatttttcaacggttatagttttccgcggtttcaaaagtggtatatgtgatttttgtgatgct 7536728  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 31968948 - 31968879
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| |||| ||||||||    
T  31968948 tttaaacaatttttcaacggttatagttttccgcggtttcaaaagtagcatacgtgatttttgtgatgct 31968879  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 1398077 - 1397993
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||  |||||| ||||||| || ||||||| |||| | || ||| ||||||| |||||||| |||| ||||||||    
T  1398077 tctattttgcgagtgtttaaataattttttaacggttatagtttttcacgattttaaaagtggcatacgtgatttttgtgatgct 1397993  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 7524047 - 7524129
Alignment:
Q  210 tattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||| |||| |||||| |||||| ||| | || || ||||| ||||||||||||||| |||||||| |||| || |||||    
T  7524047 tattttgggagactttaaataattttacaaggattttagttttcggcggtttcaaaagtgacatacgtgatttttgttatgct 7524129  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 31643582 - 31643486
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcat 304  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||| |||| |||||||| | |||||||||    
T  31643582 tctattttgcgagactttaaacaatttttcaaaggttatagttttccgcgctttcaaaagtggcatacgtgatttttgtgatgcttatacttggcat 31643486  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 29035371 - 29035287
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||| ||  |||||||||||||||||  |||||| ||||| ||||||||||||||| |||||||| |||| ||||||||    
T  29035371 tctattttgcaagtctttaaacaatttttcaactgttatagttttctgcggtttcaaaagtggcatacgtgatttttgtgatgct 29035287  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 29141902 - 29141819
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgc 291  Q
    |||||||||||||| |||||||||||||||||   || |||||||| ||||||||||||||| |||||||| |||  |||||||    
T  29141902 tctattttgcgagactttaaacaatttttcaacaattttaattttcggcggtttcaaaagtgacatacgtgatttatgtgatgc 29141819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 11483012 - 11482971
Alignment:
Q  194 ttaacgaccatatttctattttgcgagattttaaacaatttt 235  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  11483012 ttaacgaccgtatgtctattttgcgagattttaaacaatttt 11482971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 17526029 - 17525945
Alignment:
Q  208 tctattttgcgagattttaaacaatttttc-aatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgc 291  Q
    |||||||||||||| ||||||||||||||  ||   || |||||||| ||||||||||||||| |||||||| |||  |||||||    
T  17526029 tctattttgcgagactttaaacaatttttttaacaattttaattttcagcggtttcaaaagtgacatacgtgatttatgtgatgc 17525945  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 18486144 - 18486112
Alignment:
Q  212 ttttgcgagattttaaacaatttttcaatggtt 244  Q
    |||||||||||||||||||| ||||||||||||    
T  18486144 ttttgcgagattttaaacaaattttcaatggtt 18486112  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 27640788 - 27640824
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtt 244  Q
    |||||||| |||| |||||||||||||||||||||||    
T  27640788 tctattttacgagtttttaaacaatttttcaatggtt 27640824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 40897639 - 40897603
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtt 244  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  40897639 tctattttgtgagattttaaacaatttttcaacggtt 40897603  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 22499751 - 22499669
Alignment:
Q  210 tattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||    
T  22499751 tattttacgagactttaaacaatttttcaatggttatagttttctgcggtttcaaaagtgtcatacgtgatttttgtgatgct 22499669  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 29502103 - 29502004
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    ||||||||| |||| ||||||| ||||||||| ||||||| |||||| |||||| ||||||| |||||||| |||| |||||||| | ||||||||||||    
T  29502103 tctattttgtgagactttaaactatttttcaacggttatagttttccacggttttaaaagtggcatacgtgatttttgtgatgcttatacttggcatgtt 29502004  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 24779609 - 24779545
Alignment:
Q  211 attttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    ||||||||||  |||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  24779609 attttgcgagtctttaaacattttttcaacggttatagttttccgcggtttcaaaagtgtcatac 24779545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 30781197 - 30781281
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||  ||||||||||||||||| ||||||| ||||||| | ||||||||||| ||||| || |||| ||||||||    
T  30781197 tctattttgcgagtctttaaacaatttttcaacggttatagttttccgtgatttcaaaagtggcatacatgatttttgtgatgct 30781281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 9014590 - 9014653
Alignment:
Q  212 ttttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    |||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||| |||||    
T  9014590 ttttgcgagactttaaacaatttttcaatagttatagttttccgcagtttcaaaagtgacatac 9014653  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 9021610 - 9021672
Alignment:
Q  207 ttctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtg 269  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| |||||||    
T  9021610 ttctattttgcgagactttaaacaatttttcaatggttatagtttttcgcagtttgaaaagtg 9021672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 8727909 - 8727993
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||| ||| | |||||||||||||||||||||| || |||||  | |||||||||||| |||||||| |||| ||||||||    
T  8727909 tctattttacgaaactttaaacaatttttcaatggttttagttttcaacagtttcaaaagtgacatacgtgatttttgtgatgct 8727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 16649568 - 16649471
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatg 305  Q
    |||||||||||||| | ||||||||||||||| ||||||| ||| || |  ||||||||||| |||||||| | || |||||||| | |||| |||||    
T  16649568 tctattttgcgagactataaacaatttttcaacggttatagtttaccacaatttcaaaagtggcatacgtgatatttgtgatgcttatacttagcatg 16649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 17623929 - 17623832
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatg 305  Q
    |||||||||||||| | ||||||||||||||| ||||||| ||| || |  ||||||||||| |||||||| | || |||||||| | |||| |||||    
T  17623929 tctattttgcgagactataaacaatttttcaacggttatagtttaccacaatttcaaaagtggcatacgtgatatttgtgatgcttatacttagcatg 17623832  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 6961219 - 6961302
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||| ||| ||||||||| ||| ||||||| |||||||| |||||||||||| ||||  || |||| ||||||||    
T  6961219 tctattttgcgagactttgaacaatttt-caacggttatagttttccgcagtttcaaaagtggcataattgatttttgtgatgct 6961302  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 40883468 - 40883535
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    |||||||||||||| ||||||||||||||||| | || || ||||| | | ||||||||||| |||||    
T  40883468 tctattttgcgagactttaaacaatttttcaacgattttagttttcggtgatttcaaaagtggcatac 40883535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 4248889 - 4248808
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgat 289  Q
    |||||||||| ||| ||||||||||  | ||| |||| || ||||| ||||||||||||||| ||||| || |||| |||||    
T  4248889 tctattttgcaagactttaaacaatcctccaacggttttagttttcggcggtttcaaaagtggcatacatgatttttgtgat 4248808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 28755007 - 28755076
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||||||||||| | ||||| |||||  |||||||||||| | ||||| || |||| ||||||||    
T  28755007 tttaaacaatttttcaacgattatagttttctacggtttcaaaaggggcatacatgatttttgtgatgct 28755076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 36801832 - 36801748
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||    
T  36801832 tctatattgtgagactttaaacaatttttcaatggttatagttttccgcggtttcaaaagtggcatacgtgatttttgtgatgct 36801748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 5734223 - 5734307
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||| ||||  ||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||||||    
T  5734223 tctattttacgagtctttaaacaaattttcaacggttatagttttccgcggtttcaaaagtgacatacgtgatttttgtgatgct 5734307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 10394010 - 10394092
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatg 290  Q
    ||||| ||| |||| | ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||||    
T  10394010 tctatattgtgagactgtaaacaatttttcaacggttatagttttccgcggtttcaaaagtggcatacgtgatttttgtgatg 10394092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 7776956 - 7777022
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcata 274  Q
    |||||||||||||| ||||||||||||||||| | ||||| ||| ||||||||||||||||| ||||    
T  7776956 tctattttgcgagactttaaacaatttttcaacgattatagtttcccgcggtttcaaaagtggcata 7777022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 15632320 - 15632381
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtg 269  Q
    |||||||| |||| | |||||||||||||||||||||||| ||||| |||||||||||||||    
T  15632320 tctattttacgaggtgttaaacaatttttcaatggttatagttttcggcggtttcaaaagtg 15632381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 7638729 - 7638632
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgt 306  Q
    |||||||||||||| ||||||||||||||||| | || || |||||  | |||||||||||| |||||||| |||| |||||||| | ||||| |||||    
T  7638729 tctattttgcgagactttaaacaatttttcaacgatt-tagttttcaacagtttcaaaagtggcatacgtgatttttgtgatgcttatacttgacatgt 7638632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 13869329 - 13869375
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttcc 254  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  13869329 tctattttgcgagattttaaacattttttcaacggttatagttttcc 13869375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 133537 - 133618
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgat 289  Q
    ||||||||| |||| |||||| |||||| ||||||||||| ||||||||| ||| |||| ||  ||||||| |||| |||||    
T  133537 tctattttgtgagactttaaataattttacaatggttatagttttccgcgattttaaaattggtatacgtgatttttgtgat 133618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 18669134 - 18669203
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||||||||||| | ||||| ||||  ||| ||||||||||| |||||||| |||| ||||||||    
T  18669134 tttaaacaatttttcaacgtttatagttttatgcgatttcaaaagtggcatacgtgatttttgtgatgct 18669203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 2763036 - 2763102
Alignment:
Q  203 atatttctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtg 269  Q
    |||| ||||||||| ||||||||| |||||||||||| | || || |||||  ||||||||||||||    
T  2763036 atatgtctattttgagagattttatacaatttttcaacgattttagttttcgacggtttcaaaagtg 2763102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 13857799 - 13857845
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttcc 254  Q
    ||||||||||||||||||||||| |||||||  ||||||| ||||||    
T  13857799 tctattttgcgagattttaaacattttttcagcggttatagttttcc 13857845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 18707882 - 18707951
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||||||||||| | ||||| ||||  | | ||||||||||| |||||||| |||| ||||||||    
T  18707882 tttaaacaatttttcaacgcttatagttttatgtgatttcaaaagtggcatacgtgatttttgtgatgct 18707951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 18735385 - 18735454
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||| |||||| | ||||| ||||  | | |||||||||||||||||||| |||| ||||||||    
T  18735385 tttaaacaatgtttcaacgtttatagttttatgtgatttcaaaagtgtcatacgtgatttttgtgatgct 18735454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 9046072 - 9046008
Alignment:
Q  203 atatttctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaag 267  Q
    |||| ||||||||  |||| |||||| |||||||||||| || || ||||| |||||||||||||    
T  9046072 atatgtctattttatgagactttaaataatttttcaatgattttagttttcggcggtttcaaaag 9046008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 36108956 - 36109055
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    |||||||||||||| ||||||||| ||||||| ||| |||  |||||||||||||||||| | |||||||| |||| |||||||| | ||||||||||||    
T  36108956 tctattttgcgagactttaaacaaattttcaacggtcatagctttccgcggtttcaaaagcggcatacgtgatttttgtgatgcttatacttggcatgtt 36109055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 8996534 - 8996632
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    ||||||||||||||||||||||||||||||| | ||| || ||||  ||||||||||||||| |||||||| |||  |||||||| | ||||||||||||    
T  8996534 tctattttgcgagattttaaacaatttttcagt-gttttagtttttggcggtttcaaaagtggcatacgtgatttcggtgatgcttatacttggcatgtt 8996632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 25383009 - 25382926
Alignment:
Q  209 ctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    ||||||||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||| ||||| || |||| ||||||||    
T  25383009 ctattttgcgagactttgaacaatttttcaacggttatagtttttcgcggtttcaaaagtgacatacatgatttttgtgatgct 25382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 25642703 - 25642637
Alignment:
Q  209 ctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    ||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||||||||| |||||    
T  25642703 ctattttacgagactttgaacaatttttaaacggttataattttccgcggtttcaaaagtgacatac 25642637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 32017932 - 32017848
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    ||||||||||||||||| |||| ||||||||  |||||||||||||| |||||||| |||  |||||||| | ||||| ||||||    
T  32017932 tttaaacaatttttcaacggttttaattttcgacggtttcaaaagtggcatacgtgatttatgtgatgcttatacttgacatgtt 32017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 11635947 - 11636042
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggca 303  Q
    ||||||||| |||| ||||||||||||||||| |  |||| |||||| | |||||||||||| ||||| || |||| |||||||| | ||||||||    
T  11635947 tctattttgtgagactttaaacaatttttcaacgaatatagttttccacagtttcaaaagtggcatacatgatttttgtgatgcttatacttggca 11636042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 8995158 - 8995253
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggca 303  Q
    |||||||||||||| ||| | |||||||||||  ||| || ||||| ||| ||||||||||| ||| |||| ||||  ||||||| | ||||||||    
T  8995158 tctattttgcgagactttgagcaatttttcaactgttttagttttcagcgatttcaaaagtggcattcgtgatttttctgatgcttatacttggca 8995253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 17836615 - 17836716
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataa--ttttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatg 305  Q
    |||||||| |||||   ||||||||||||| | |||||||   ||||||||| |||||||||| |||||||||  ||| |||||||  | ||||||||||    
T  17836615 tctattttacgagacaataaacaatttttcgaaggttatatagttttccgcgatttcaaaagtatcatacgtgaattttgtgatgcatatacttggcatg 17836714  T
Q  306 tt 307  Q
    ||    
T  17836715 tt 17836716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 7413332 - 7413369
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtta 245  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  7413332 tctattttgcgagactttaaacaatttttcaacggtta 7413369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 18658004 - 18658088
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||| ||||  ||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||||||    
T  18658004 tctattttacgagtctttaaacaaattttcaacggttatagttttccgcggtttcaaaagtgacatacgtgatttttgtgatgct 18658088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 2619071 - 2619131
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagt 268  Q
    |||||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  2619071 tctattttgcgacactttaaacaatttttcaacggttatagttttccgcgctttcaaaagt 2619131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 31174531 - 31174447
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||  ||||||||||||||||| |||||||  |||||||| ||| ||||||  ||||| || |||| ||||||||    
T  31174531 tctattttgcgagtctttaaacaatttttcaacggttataggtttccgcgatttgaaaagtagcatacatgatttttgtgatgct 31174447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 576421 - 576340
Alignment:
Q  223 tttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcat 304  Q
    ||||||||||||||||| | || || ||||||||| ||||| ||||| |||| ||| |||| |||||||| | |||||||||    
T  576421 tttaaacaatttttcaacgtttgtagttttccgcgatttcataagtgccatatgtgatttttgtgatgcttatacttggcat 576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 4618335 - 4618367
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaat 240  Q
    ||||||||||||||||||| |||||||||||||    
T  4618335 tctattttgcgagattttatacaatttttcaat 4618367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 25807145 - 25807181
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtt 244  Q
    |||||||| |||| |||||||||||||||||||||||    
T  25807145 tctattttacgagtttttaaacaatttttcaatggtt 25807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 21852188 - 21852272
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||  ||||||||||||||||| | |||||||||||| |||||||||||||| ||||| || |||| ||||||||    
T  21852188 tctattttgcgagtctttaaacaatttttcaacgtttataattttccacggtttcaaaagtgacatacatgatttttgtgatgct 21852272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 9246871 - 9246796
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgctttt 283  Q
    |||||||||| ||| |||||||| |||||||| ||||||| ||||||||||||||||||||| |||| ||| ||||    
T  9246871 tctattttgcaagactttaaacattttttcaacggttatagttttccgcggtttcaaaagtggcatatgtgatttt 9246796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 46601189 - 46601273
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||| |||||||||||||| ||  |||||  |||||| || ||||||||||| |||| ||| |||| ||||||||    
T  46601189 tctattttgcgagactttaaacaattttttaaccgttatggttttccccgatttcaaaagtggcatatgtgatttttgtgatgct 46601273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 18113676 - 18113735
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaag 267  Q
    ||||||||||||| |||||||||||||||||||||||  | ||||| |||||| ||||||    
T  18113676 tctattttgcgaggttttaaacaatttttcaatggtttgagttttcggcggttccaaaag 18113735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 25030439 - 25030506
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    |||||||||  ||| |||||| ||||||| || ||||||| ||||||||| ||||||||||| |||||    
T  25030439 tctattttggaagactttaaataattttttaacggttatagttttccgcgctttcaaaagtgacatac 25030506  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 42225483 - 42225534
Alignment:
Q  202 catatttctattttgcgagattttaaacaatttttcaatggttataattttc 253  Q
    ||||| |||||||||||||||||||||||||||| | |||||| || |||||    
T  42225483 catatatctattttgcgagattttaaacaattttacgatggttttagttttc 42225534  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 45807202 - 45807257
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttca 263  Q
    |||||||||  ||||||||||||||||||||| |||| ||| |||| |||||||||    
T  45807202 tctattttgtaagattttaaacaatttttcaacggttttaaatttcggcggtttca 45807257  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 44317753 - 44317790
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtta 245  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  44317753 tctattttgcgagattttatacaatttttcaatagtta 44317790  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 49001452 - 49001415
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtta 245  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  49001452 tctattttgcgagactttaaacaatttttcaacggtta 49001415  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 15083937 - 15083901
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggtt 244  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  15083937 tctattttgcgagtttttaaacaatttttcaacggtt 15083901  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 24790741 - 24790773
Alignment:
Q  213 tttgcgagattttaaacaatttttcaatggtta 245  Q
    ||||||||| |||||||||||||||||||||||    
T  24790741 tttgcgagactttaaacaatttttcaatggtta 24790773  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 20117663 - 20117747
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||| ||||||||| ||||||| | || || ||||| ||||||||||||||| |||||||| |||| ||||||||    
T  20117663 tctattttgcgagactttaaacaacttttcaacgattttagttttcggcggtttcaaaagtggcatacgtgatttttgtgatgct 20117747  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 37042523 - 37042425
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    ||||||||| |||| |||||| |||||| ||| ||||||| |||||||||| |||||||||| |||||||| |||| |||||||  | ||||||||||||    
T  37042523 tctattttgtgagactttaaataatttt-caacggttatagttttccgcggcttcaaaagtgacatacgtgatttttgtgatgcgtatacttggcatgtt 37042425  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 5930015 - 5930099
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||||||||||||||||||||  ||| | || || ||||| || |||||||||||| |||||||| |||| || |||||    
T  5930015 tctattttgcgagattttaaacaatttgccaaagattttagttttcagcagtttcaaaagtgacatacgtgatttttgtcatgct 5930099  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 30062650 - 30062586
Alignment:
Q  243 ttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    ||||| ||||||||||||||||||||| ||||||||  ||| |||||||| | ||||||||||||    
T  30062650 ttatagttttccgcggtttcaaaagtgacatacgtgagttttgtgatgcttatacttggcatgtt 30062586  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 43361327 - 43361243
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||||||| ||| ||| |||||||||  || ||||||| |||||| || ||||||||||| |||||||| |||| ||||||||    
T  43361327 tctattttgccagactttgaacaattttgtaacggttatagttttccacgatttcaaaagtggcatacgtgatttttgtgatgct 43361243  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 20071125 - 20071066
Alignment:
Q  210 tattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtg 269  Q
    |||||| ||||| ||||||||||||||||| |||| ||||||||  ||||||||||||||    
T  20071125 tattttacgagactttaaacaatttttcaacggttttaattttcgacggtttcaaaagtg 20071066  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 22578905 - 22578806
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgctcaaacttggcatgtt 307  Q
    |||||||| ||||| ||||||||||||||||| |||| || ||||   | |||||||||||  |||||||| |||| |||||||| |  |||||||||||    
T  22578905 tctattttacgagactttaaacaatttttcaacggttctagtttttgacagtttcaaaagtagcatacgtgatttttgtgatgcttatgcttggcatgtt 22578806  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 41817642 - 41817724
Alignment:
Q  210 tattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgcttttagtgatgct 292  Q
    |||||| ||||  ||||||||||||||||||||||||| | || |  ||| ||||||||| |||||||| |||| ||||||||    
T  41817642 tattttacgagtctttaaacaatttttcaatggttatagtatttcatggtatcaaaagtggcatacgtgatttttgtgatgct 41817724  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 19577147 - 19577084
Alignment:
Q  212 ttttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||| | ||| ||||||| |||||    
T  19577147 ttttgcgagacattaaacaatttttcaacggttatagttttccgagattttaaaagtgacatac 19577084  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 38705527 - 38705464
Alignment:
Q  211 attttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcata 274  Q
    ||||||| ||||||||||||||||||||| | || ||||||||  ||||| |||||||| ||||    
T  38705527 attttgcaagattttaaacaatttttcaacgtttttaattttcgacggttccaaaagtggcata 38705464  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 17701356 - 17701398
Alignment:
Q  211 attttgcgagattttaaacaatttttcaatggttataattttc 253  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||    
T  17701356 attttgcaagattttcaacaatttttcaatggttttaattttc 17701398  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 26785134 - 26785167
Alignment:
Q  212 ttttgcgagattttaaacaatttttcaatggtta 245  Q
    |||||||||| |||||||||||||||||||||||    
T  26785134 ttttgcgagactttaaacaatttttcaatggtta 26785167  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 303730 - 303671
Alignment:
Q  210 tattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtg 269  Q
    |||||| ||||| ||||||||||||||||| |||| ||||||||  ||||||||||||||    
T  303730 tattttacgagactttaaacaatttttcaacggttttaattttcgacggtttcaaaagtg 303671  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 82816 - 82749
Alignment:
Q  208 tctattttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatac 275  Q
    |||||||||||||| ||||||||||||||||| | || || ||||| | | ||||||||||| |||||    
T  82816 tctattttgcgagactttaaacaatttttcaacgattttagttttcggtgatttcaaaagtggcatac 82749  T

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Target: scaffold0778 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 1483 - 1451
Alignment:
Q  203 atatttctattttgcgagattttaaacaatttt 235  Q
    |||| ||||||||||||||||||||||||||||    
T  1483 atatgtctattttgcgagattttaaacaatttt 1451  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 33747 - 33675
Alignment:
Q  211 attttgcgagattttaaacaatttttcaatggttataattttccgcggtttcaaaagtgtcatacgtgctttt 283  Q
    ||||| ||||||||||||||||||||||| |||| || |||||  | |||  ||||||| |||||||| ||||    
T  33747 attttacgagattttaaacaatttttcaacggttttagttttcgccagttctaaaagtggcatacgtgatttt 33675  T

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