View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_24 (Length: 317)
Name: NF20809_low_24
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 20479625 - 20479512
Alignment:
| Q |
186 |
gcagcagaactttgatcactctaaaagcgcttcaactgacaccgaaaaaacggcctcaaaaaatcaagtacaacaactccccagactaatcgaatccgtc |
285 |
Q |
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| T |
20479625 |
gcagcagaactttgatcactctaaaagcgcttcaactgacaccgaaaaaacggcctcaaaaaatcaagtacaacaactccccagactaatcgaatccgtc |
20479526 |
T |
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| Q |
286 |
cagacagaaccaag |
299 |
Q |
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|||||||||||||| |
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| T |
20479525 |
cagacagaaccaag |
20479512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 20479802 - 20479702
Alignment:
| Q |
9 |
agcagagaggacaagatcagctacaaaattaggaccgaaacatccactacacacccttttaagacggaagcacctacaccaactaggaaatgtacagagg |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
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| T |
20479802 |
agcagagaggacaagataggctacaaaattaggaccgaaacatccactacacacccttttaagaccgaaacacatacaccaactaggaaatgtacagagg |
20479703 |
T |
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| Q |
109 |
g |
109 |
Q |
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| T |
20479702 |
g |
20479702 |
T |
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