View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_25 (Length: 306)
Name: NF20809_low_25
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_25 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 7340 - 7049
Alignment:
| Q |
1 |
gaataaactttttctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctt |
100 |
Q |
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| T |
7340 |
gaataaactttttctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctt |
7241 |
T |
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| Q |
101 |
tg-ctattattacacaagtgtttcatgctacatccaacatactccttaacacaccgctctttatttatatttgagtctatcaaattcataaacannnnnn |
199 |
Q |
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| T |
7240 |
tgcctattattacacaagtgtttcatgctacatccaacatactccttaacaaaccgctctttatttatatttgagtctatcaaattcataatcattttta |
7141 |
T |
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| Q |
200 |
nnnnnnnnnctattattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccagaaaattacgagatttatatttt |
294 |
Q |
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| T |
7140 |
attttttttctattattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccag---ataacgagatttatatttt |
7049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 11094 - 11053
Alignment:
| Q |
235 |
ttatctcaattggttcctttttcatcattct-gaaccagaaa |
275 |
Q |
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| T |
11094 |
ttatctcaattggtgcctttttcatcattctggaaccagaaa |
11053 |
T |
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