View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20809_low_26 (Length: 305)
Name: NF20809_low_26
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 32601294 - 32601013
Alignment:
| Q |
1 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601294 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
32601195 |
T |
|
| Q |
101 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaagg--atgatataaccgcctcttgtgcggaaactgaga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32601194 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatatgatataaccgcctcttgtgcggaaactgaga |
32601095 |
T |
|
| Q |
199 |
aagaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601094 |
aagaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
32601013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 32633465 - 32633186
Alignment:
| Q |
1 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
32633465 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccataagagtgatggttatttattggacactaaaaatcaaaataacaaatgtgacgg |
32633366 |
T |
|
| Q |
101 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaactgagaaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32633365 |
tgtccaaaatgttaacagtgatggtaatggcggctacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaactgagaag |
32633266 |
T |
|
| Q |
201 |
gaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
280 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
32633265 |
gaatttaattctcgcaaacgtaaactagaatcgcctatagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32633186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 32659185 - 32658906
Alignment:
| Q |
1 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
32659185 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaataacaaatgtgacgg |
32659086 |
T |
|
| Q |
101 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaactgagaaa |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||| |
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|
| T |
32659085 |
tgtccaaaatgttaacagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttatgaccgcctcttgtgttgaaactgagaag |
32658986 |
T |
|
| Q |
201 |
gaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
280 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
32658985 |
gaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32658906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 32583624 - 32583345
Alignment:
| Q |
1 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| || || |
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|
| T |
32583624 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattagacactaaaaatcaaaataacaaatgcgatgg |
32583525 |
T |
|
| Q |
101 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaactgagaaa |
200 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32583524 |
tctccaaaatgttaacagtgatggtcatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaactgagaag |
32583425 |
T |
|
| Q |
201 |
gaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
280 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32583424 |
gaatttaattctcgcaaacgtaatcgggaatcgcctgcagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32583345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41149543 - 41149308
Alignment:
| Q |
1 |
cgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | | |
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|
| T |
41149543 |
cgttagaatcgaataacatcataaagcgcattgattttgttaacaacaagagtgatggttatttattggacactaattaccaaaataacaaatgcaaagc |
41149444 |
T |
|
| Q |
101 |
tgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaa---ctgag |
197 |
Q |
| |
|
||| || ||||||||| |||||||||||| | || ||||||||||| || |||||||||||| |||| ||||| |||||||||||| || ||||| |
|
|
| T |
41149443 |
tgttcacaatgttaacagtgatggtaatgcggatgatgatgaaaaattcggtactggtgttaagaatgagctaaccacctcttgtgcgggaacttctgag |
41149344 |
T |
|
| Q |
198 |
aaagaattttattttcgcaaacgtaaacgggaatcg |
233 |
Q |
| |
|
|| || ||||||| |||||||||||||||||||||| |
|
|
| T |
41149343 |
aaggagttttattctcgcaaacgtaaacgggaatcg |
41149308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 41175992 - 41175762
Alignment:
| Q |
3 |
ttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacggtg |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| |
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|
| T |
41175992 |
ttagaatcgagtaacatcataaagcgcattgaatttgttaaccacaagagtgatggttatttattggacactaattaccaaaataacaaatgggagggtg |
41175893 |
T |
|
| Q |
103 |
tccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaa---ctgagaa |
199 |
Q |
| |
|
||||||||||| ||||||||| || | | || || |||||||| |||| ||||||| ||||| || || | || ||||||| ||||| ||||||| |
|
|
| T |
41175892 |
tccaaaatgttgacggtgatgatatt---gatgatgacgaaaaattcggcaatggtgttgaggattatctagctgcgtcttgtgtggaaatctctgagaa |
41175796 |
T |
|
| Q |
200 |
agaattttattttcgcaaacgtaaacgggaatcg |
233 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| |
|
|
| T |
41175795 |
ggaatttaattctcgcaaacgtaaacgggaatcg |
41175762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 26400083 - 26399879
Alignment:
| Q |
31 |
ttgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacggtgtccaaaatgttaacggtgatggtaatgg |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
26400083 |
ttgatttggttaaccacaagagtgatggtaatttattggacgctaaaagccaaaacaacaaatgtgagggtgtccaaaattttaacggtgatggtaatga |
26399984 |
T |
|
| Q |
131 |
cggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaa---ctgagaaagaattttattttcgcaaacgtaaacgg |
227 |
Q |
| |
|
| | | |||||||||| |||||||||| |||| ||| || || |||||| || ||||| ||||||| |||||| ||| ||||||||||||| || |
|
|
| T |
26399983 |
ggatggcaatgaaaaattcagcactggtgtcgaggacgatctagccacctcttctgtggaaacttctgagaatgaatttcattctcgcaaacgtaaaagg |
26399884 |
T |
|
| Q |
228 |
gaatc |
232 |
Q |
| |
|
||||| |
|
|
| T |
26399883 |
gaatc |
26399879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 21014469 - 21014676
Alignment:
| Q |
31 |
ttgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataacaaatgtgacgg---tgtccaaaatgttaacggtgatggtaa |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||| |||||| | |||| ||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
21014469 |
ttgatttggttaaccactagagtgatggtaatttattggacgctaaaagctaaaacaacaaatgtgagggtactgtccaaaattttaacggtgatggtaa |
21014568 |
T |
|
| Q |
128 |
tggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcggaaa---ctgagaaagaattttattttcgcaaacgtaaa |
224 |
Q |
| |
|
|| | ||| |||||||||| |||||||||| |||| ||| || | ||| || || ||||| ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
21014569 |
tgaggatgacaatgaaaaattcagcactggtgtcgaggacgatctaggcacctgttttgtggaaacttctgagaatgaatttcattctcgcaaacgtaaa |
21014668 |
T |
|
| Q |
225 |
cgggaatc |
232 |
Q |
| |
|
||||||| |
|
|
| T |
21014669 |
agggaatc |
21014676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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