View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_34 (Length: 253)

Name: NF20809_low_34
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_34
NF20809_low_34
[»] chr5 (5 HSPs)
chr5 (98-242)||(32021260-32021404)
chr5 (1-94)||(32021943-32022036)
chr5 (15-69)||(42500354-42500408)
chr5 (24-69)||(24030556-24030601)
chr5 (24-69)||(42100200-42100245)
[»] chr4 (5 HSPs)
chr4 (132-208)||(24375919-24375995)
chr4 (132-202)||(45092173-45092243)
chr4 (132-208)||(21781239-21781315)
chr4 (5-69)||(2243948-2244010)
chr4 (17-69)||(42404129-42404181)
[»] chr7 (4 HSPs)
chr7 (137-208)||(11788881-11788952)
chr7 (128-202)||(9106125-9106199)
chr7 (212-242)||(11788815-11788845)
chr7 (24-69)||(38500072-38500117)
[»] chr1 (6 HSPs)
chr1 (15-69)||(49938619-49938673)
chr1 (24-69)||(41195348-41195393)
chr1 (23-69)||(41505558-41505604)
chr1 (31-76)||(38189649-38189694)
chr1 (5-69)||(488898-488962)
chr1 (29-69)||(43990119-43990159)
[»] chr8 (4 HSPs)
chr8 (24-69)||(40981001-40981046)
chr8 (23-69)||(29169029-29169075)
chr8 (1-73)||(7514470-7514543)
chr8 (25-69)||(1058229-1058273)
[»] chr6 (2 HSPs)
chr6 (24-69)||(6538388-6538433)
chr6 (23-71)||(9604739-9604787)
[»] chr3 (4 HSPs)
chr3 (24-72)||(30956780-30956828)
chr3 (24-72)||(30972592-30972640)
chr3 (24-72)||(35328307-35328354)
chr3 (5-69)||(42747886-42747950)
[»] chr2 (3 HSPs)
chr2 (15-69)||(2981735-2981789)
chr2 (24-69)||(15757820-15757865)
chr2 (24-69)||(41407172-41407217)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 32021404 - 32021260
Alignment:
Q  98 cgaccacctccaaagccaccatggagtttctttttctggtttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaaca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32021404 cgaccacctccaaagccaccatggagtttctttttctggtttaaggctgcactctagttgtttgacaaaaagcaccatgagggttatgtcttttggaaca 32021305  T
Q  198 aagtatccagtttacgaggctggcccccattgcaacaatctctct 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  32021304 aagtatccagtttacgaggctggtccccattgcaacaatctctct 32021260  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32022036 - 32021943
Alignment:
Q  1 tttgctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaacatgatctatagatagttttgatgaac 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32022036 tttgctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaacatgatctatagatagttttgatgaac 32021943  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 42500354 - 42500408
Alignment:
Q  15 agcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||| ||| |||||||||||||||| ||| |||||| || ||||||||||||    
T  42500354 agcttatacattagcgcttgtgctataagctggaaataagctgtttatccaaaca 42500408  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 24030556 - 24030601
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||| ||||||||||||| |||||||||| || ||||||||||||    
T  24030556 ataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 42100245 - 42100200
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||| ||||| ||||||||||  ||||||||||||||    
T  42100245 ataagcgcttgtgatataagctgcaaataagttatttatccaaaca 42100200  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 24375919 - 24375995
Alignment:
Q  132 tctggtttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaacaaagtatccagt 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  24375919 tctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtcttttggaacaaagtagccagt 24375995  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 45092173 - 45092243
Alignment:
Q  132 tctggtttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaacaaagta 202  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  45092173 tctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtcttttggaacaaagta 45092243  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 21781239 - 21781315
Alignment:
Q  132 tctggtttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaacaaagtatccagt 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||||||||| |||||    
T  21781239 tctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagagttatgtcttttggaacaaagtagccagt 21781315  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 2244010 - 2243948
Alignment:
Q  5 ctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||||||||||||| |  || | ||||||||||| ||| ||||||||| ||||||||||||    
T  2244010 ctataaaactagcttatgaa--agtgtttgtgctataagctgtaaataatctgtttatccaaaca 2243948  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42404129 - 42404181
Alignment:
Q  17 cttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||| |||||| |||||||||||||  ||||||||| ||||| |||||||||    
T  42404129 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 42404181  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 11788952 - 11788881
Alignment:
Q  137 tttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaacaaagtatccagt 208  Q
    ||||||| ||||| ||  ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  11788952 tttaaggatgcacgctttttgtttgacaaaaagacccaagagggttatgtcttttggaacaaagtagccagt 11788881  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 9106199 - 9106125
Alignment:
Q  128 tttttctggtttaaggctgcactctagttgtttgacaaaaagccccatgagggttatgtcttttggaacaaagta 202  Q
    ||||||| |||||||| |||| | | ||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  9106199 tttttctagtttaaggatgcatttttgttgtttgacaaaaatccccaaaagggttatgtcttttggaacaaagta 9106125  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 11788845 - 11788815
Alignment:
Q  212 cgaggctggcccccattgcaacaatctctct 242  Q
    |||||||||||||||||||||||||||||||    
T  11788845 cgaggctggcccccattgcaacaatctctct 11788815  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 38500072 - 38500117
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||||||||| |||||||||| || |||||| |||||    
T  38500072 ataagcgcttgtgctataaactgcaaataagctgtttatctaaaca 38500117  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 49938673 - 49938619
Alignment:
Q  15 agcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||| |||||||||||||||||||| ||||| |||| || ||||||||||||    
T  49938673 agcttatacataagcgcttgtgctataagctgcagataagctttttatccaaaca 49938619  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 41195348 - 41195393
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||    
T  41195348 ataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 41505604 - 41505558
Alignment:
Q  23 cataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||| ||||||||||| |||||||||| || ||||||||||||    
T  41505604 cataagcgtttgtgctataagctgcaaataagctgtttatccaaaca 41505558  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 38189694 - 38189649
Alignment:
Q  31 cttgtgctataatctgcaaataatctatttatccaaacatgatcta 76  Q
    |||||||||||| ||||||||||  | |||||||||||||||||||    
T  38189694 cttgtgctataaactgcaaataagttgtttatccaaacatgatcta 38189649  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 488962 - 488898
Alignment:
Q  5 ctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||| || |||||||| ||||||| |||||||||||| || |||||||  |||| |||||||||    
T  488962 ctatagaaatagcttatacataagcacttgtgctataagcttcaaataagttattaatccaaaca 488898  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 43990159 - 43990119
Alignment:
Q  29 cgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  43990159 cgcttgtgctataaactgcaaatacgctatttatccaaaca 43990119  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 40981046 - 40981001
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||    
T  40981046 ataagcgcttgtgctataagctgcaaataagctgtttatccaaaca 40981001  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 29169029 - 29169075
Alignment:
Q  23 cataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||||||||||||||| ||||| |||| || ||||||||||||    
T  29169029 cataagcgcttgtgctataagctgcagataagctctttatccaaaca 29169075  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7514543 - 7514470
Alignment:
Q  1 tttgctataaaactagcttatgcataagcgctt-gtgctataatctgcaaataatctatttatccaaacatgat 73  Q
    ||||||||| || |||||||| |||||| |||| |||||||||||||||| |||  ||||||| |||| |||||    
T  7514543 tttgctatagaaatagcttatacataagggctttgtgctataatctgcaactaagttatttattcaaatatgat 7514470  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 1058229 - 1058273
Alignment:
Q  25 taagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||||||||||||| |||||||||| || ||||| ||||||    
T  1058229 taagcgcttgtgctataagctgcaaataagctgtttattcaaaca 1058273  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6538433 - 6538388
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||    
T  6538433 ataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9604787 - 9604739
Alignment:
Q  23 cataagcgcttgtgctataatctgcaaataatctatttatccaaacatg 71  Q
    ||||| |||||||||||||| |||||||||| || ||||||||||||||    
T  9604787 cataaacgcttgtgctataaactgcaaataagctgtttatccaaacatg 9604739  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 30956780 - 30956828
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaacatga 72  Q
    |||||| |||||||||||| |||||||||| || |||||||||||||||    
T  30956780 ataagcccttgtgctataagctgcaaataagctgtttatccaaacatga 30956828  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 30972592 - 30972640
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaacatga 72  Q
    |||||| |||||||||||| |||||||||| || |||||||||||||||    
T  30972592 ataagcccttgtgctataagctgcaaataagctgtttatccaaacatga 30972640  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 35328307 - 35328354
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaacatga 72  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  35328307 ataagcgcttgt-ctataagctgcaaataagctatttatccaaacatga 35328354  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 42747886 - 42747950
Alignment:
Q  5 ctataaaactagcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||| || |||||||| |||| ||| |||||||||||  ||||||||| || ||||||||||||    
T  42747886 ctatagaaatagcttatacataggcgtttgtgctataagttgcaaataagctgtttatccaaaca 42747950  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 2981789 - 2981735
Alignment:
Q  15 agcttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    |||||||||||||| |||||| |||||| ||| |||||| || ||||||||||||    
T  2981789 agcttatgcataagtgcttgttctataagctgtaaataagctctttatccaaaca 2981735  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 15757820 - 15757865
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||||||||| ||| |||||| || ||||||||||||    
T  15757820 ataagcgcttgtgctataagctgaaaataagctgtttatccaaaca 15757865  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 41407217 - 41407172
Alignment:
Q  24 ataagcgcttgtgctataatctgcaaataatctatttatccaaaca 69  Q
    ||||||||||||||||||| ||||||| || || ||||||||||||    
T  41407217 ataagcgcttgtgctataagctgcaaacaagctgtttatccaaaca 41407172  T

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