View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_50 (Length: 228)
Name: NF20809_low_50
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_50 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 17843744 - 17843566
Alignment:
| Q |
50 |
tggtatacttaagggtgatacccctttattttatgatttaataggatgctccttgatgtttcagctaggggtagtattagagtaaaaatagatcttgagg |
149 |
Q |
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| T |
17843744 |
tggtatacttaagggtgatacacctttatttcatgatttactaggatgctccttgatgtttcagccgggggtagtattagagtaaaaatagaccttgagg |
17843645 |
T |
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| Q |
150 |
ttcaaaccataatttagaacatggctcagaataagtaccgtgttgagattgaccaatgtgagatacgagtgcttgaagt |
228 |
Q |
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| T |
17843644 |
ttcaaaccataatttagaacatggctcagaataagtaccgtgttgagactgaccaatgtgagatacgagtgcttgaagt |
17843566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 19863412 - 19863275
Alignment:
| Q |
91 |
taggatgctccttgatgtttcagctaggggtagtattagagtaaaaatagatcttgaggttcaaaccataatttagaacatggctcagaataagtaccgt |
190 |
Q |
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| T |
19863412 |
taggatgctccttgatgcctcagctgggggtagtataagagaaaaaacagaccttgaggttcaaactctaattgagatcatgactttgaatgagtattgt |
19863313 |
T |
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| Q |
191 |
gttgagattgaccaatgtgagatacgagtgcttgaagt |
228 |
Q |
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| T |
19863312 |
gttgagattgagcaaagtgagaaaggagtgcttgaagt |
19863275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 1919 - 1785
Alignment:
| Q |
89 |
aataggatgctccttgatgtttcagctaggggtagtattagagtaaaaatagatcttgaggttcaaaccataatttagaacatggctcagaataagtacc |
188 |
Q |
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| T |
1919 |
aataggatgctccttgatacctcagctgggggtagtataaaatagaaaacagaccttgaggttcaaaccctaattgagatcatggctcagaatgagtatt |
1820 |
T |
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| Q |
189 |
gtgttgagattgaccaatgtgagatacgagtgctt |
223 |
Q |
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| T |
1819 |
gtgttgagattgagaaaagtgagataggagtgctt |
1785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 28110820 - 28110687
Alignment:
| Q |
91 |
taggatgctccttgatgtttcagctaggggtagtattagagtaaaaatagatcttgaggttcaaaccataatttagaacatggctcagaataagtaccgt |
190 |
Q |
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||||||||| ||||||| | |||| |||||||||| |||| ||| ||| ||||||||||||||| ||||| ||| ||||||||||||| |||| | |
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| T |
28110820 |
taggatgcttcttgatgccttagctgggggtagtataagagaaaacccagaccttgaggttcaaaccctaattgagatcatggctcagaatgagtattat |
28110721 |
T |
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| Q |
191 |
gttgagattgaccaatgtgagatacgagtgcttg |
224 |
Q |
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| T |
28110720 |
gttgagattgagcaaagtgagaaaggagtgcttg |
28110687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 64664 - 64786
Alignment:
| Q |
99 |
tccttgatgtttcagctaggggtagtattagagtaaaaatagatcttgaggttcaaaccataatttagaacatggctcagaataagtaccgtgttgagat |
198 |
Q |
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| T |
64664 |
tccttgatgcctcagctgtgggtagtataagag--aaaacagaccttgaggttcaaacactaattgagatcatggctcagaatgagtattgtgttgagat |
64761 |
T |
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| Q |
199 |
tgaccaatgtgagatacgagtgctt |
223 |
Q |
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||| ||| |||| ||| |||||||| |
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| T |
64762 |
tgagcaaggtgatataggagtgctt |
64786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 21021809 - 21021691
Alignment:
| Q |
106 |
tgtttcagctaggggtagtattagagtaaaaatagatcttgaggttcaaaccataatttagaacatggctcagaataagtaccgtgttgagattgaccaa |
205 |
Q |
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|||| ||||| |||||||||| |||| |||| ||| ||| |||||||||| ||||| || ||||||||||||| ||| ||||||||||||| ||| |
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| T |
21021809 |
tgttacagctgggggtagtataagagagaaaacagaccttaaggttcaaactctaattgagttcatggctcagaatgagtgttgtgttgagattgagcaa |
21021710 |
T |
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| Q |
206 |
tgtgagatacgagtgcttg |
224 |
Q |
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| T |
21021709 |
agtgagataggagtgcttg |
21021691 |
T |
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