View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_52 (Length: 217)

Name: NF20809_low_52
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_52
NF20809_low_52
[»] chr7 (7 HSPs)
chr7 (1-217)||(9647381-9647597)
chr7 (1-217)||(7842698-7842914)
chr7 (1-217)||(9595882-9596098)
chr7 (1-217)||(23446684-23446900)
chr7 (1-217)||(9646845-9647061)
chr7 (1-217)||(40998665-40998881)
chr7 (1-217)||(41000524-41000741)
[»] chr4 (9 HSPs)
chr4 (1-217)||(13518406-13518622)
chr4 (1-217)||(15018086-15018302)
chr4 (1-217)||(15019726-15019942)
chr4 (1-217)||(39488596-39488812)
chr4 (20-217)||(9399084-9399281)
chr4 (53-217)||(13517922-13518086)
chr4 (21-217)||(11098521-11098718)
chr4 (163-217)||(46690530-46690584)
chr4 (21-217)||(42872895-42873090)
[»] chr8 (5 HSPs)
chr8 (1-217)||(8366129-8366345)
chr8 (50-217)||(17277431-17277598)
chr8 (1-217)||(17278121-17278336)
chr8 (128-217)||(6778228-6778316)
chr8 (21-217)||(17857185-17857380)
[»] chr5 (7 HSPs)
chr5 (1-217)||(244884-245100)
chr5 (1-217)||(29949609-29949825)
chr5 (1-217)||(29951247-29951463)
chr5 (128-217)||(38936739-38936828)
chr5 (45-217)||(16780633-16780804)
chr5 (163-217)||(21352695-21352749)
chr5 (109-214)||(258977-259081)
[»] chr2 (8 HSPs)
chr2 (1-217)||(22300342-22300558)
chr2 (1-217)||(24806730-24806946)
chr2 (1-217)||(18535748-18535964)
chr2 (13-217)||(24808598-24808802)
chr2 (97-217)||(31974035-31974155)
chr2 (121-217)||(22299712-22299808)
chr2 (21-217)||(44793275-44793470)
chr2 (150-217)||(44792637-44792703)
[»] chr1 (11 HSPs)
chr1 (1-217)||(24157499-24157715)
chr1 (1-217)||(36233330-36233546)
chr1 (1-214)||(48462830-48463043)
chr1 (1-217)||(20190876-20191092)
chr1 (2-217)||(20189244-20189459)
chr1 (44-217)||(36233845-36234018)
chr1 (28-217)||(48463830-48464016)
chr1 (7-214)||(20759128-20759328)
chr1 (21-217)||(40553925-40554120)
chr1 (150-217)||(31390171-31390237)
chr1 (150-217)||(40554650-40554716)
[»] chr3 (11 HSPs)
chr3 (1-214)||(25531661-25531874)
chr3 (1-217)||(5554237-5554453)
chr3 (1-217)||(16346656-16346872)
chr3 (29-217)||(23460224-23460412)
chr3 (1-217)||(47418422-47418638)
chr3 (1-217)||(5553220-5553436)
chr3 (19-217)||(16022616-16022814)
chr3 (1-217)||(47566498-47566713)
chr3 (44-209)||(32570510-32570674)
chr3 (145-191)||(25532821-25532867)
chr3 (147-217)||(2683507-2683576)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-217)||(54879-55095)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-217)||(542-746)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-217)||(86605-86817)
scaffold0026 (139-217)||(646-724)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-217)||(241068-241284)
[»] scaffold0146 (1 HSPs)
scaffold0146 (68-217)||(31613-31762)
[»] scaffold0269 (2 HSPs)
scaffold0269 (1-106)||(1849-1954)
scaffold0269 (148-217)||(1962-2029)
[»] scaffold0021 (2 HSPs)
scaffold0021 (121-217)||(17679-17775)
scaffold0021 (121-217)||(27210-27306)
[»] scaffold0096 (1 HSPs)
scaffold0096 (128-217)||(22421-22510)
[»] scaffold0180 (1 HSPs)
scaffold0180 (21-217)||(11265-11460)
[»] scaffold0139 (1 HSPs)
scaffold0139 (21-217)||(4247-4442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (105-217)||(375259-375370)
[»] scaffold0321 (1 HSPs)
scaffold0321 (21-217)||(5242-5437)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 9647381 - 9647597
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9647381 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacg 9647480  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  9647481 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 9647580  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  9647581 aatttggttcttttatt 9647597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7842914 - 7842698
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||| |||| ||||    
T  7842914 cacgttttctacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacggatgaattgtatagaatttcgtaagctttccaacg 7842815  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  7842814 agttaaagatcacctcaaacggacatccagagctctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaatt 7842715  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  7842714 aatttggttcttttatt 7842698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 9595882 - 9596098
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9595882 cacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 9595981  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| | |||||  |||||||| | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||    
T  9595982 agttaaagatcacctcaaacgaacatcgggagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagtt 9596081  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  9596082 aatttggttcttttatt 9596098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23446900 - 23446684
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  23446900 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaatttggtaagctttccaacg 23446801  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23446800 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 23446701  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  23446700 aatttggttcttttatt 23446684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 9646845 - 9647061
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9646845 cacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 9646944  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| | |||||   ||||||| | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||    
T  9646945 agttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagtt 9647044  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  9647045 aatttggttcttttatt 9647061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 40998665 - 40998881
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| ||||||||  |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  40998665 cacgtcttctacttacagctcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacg 40998764  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  40998765 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaatt 40998864  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  40998865 aatttggttcttttatt 40998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41000524 - 41000741
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||||||||||||  |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  41000524 cacgtcttctacttacaactcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaatttcgcaagctttccaacg 41000623  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctac-aaaaataaaactttgaactcaaaat 199  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||    
T  41000624 agttagagatcacctcaaacggacatccagagctccagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaat 41000723  T
Q  200 taatttgattcttttatt 217  Q
    ||||||| ||||||||||    
T  41000724 taatttggttcttttatt 41000741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 13518406 - 13518622
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13518406 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacg 13518505  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13518506 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 13518605  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  13518606 aatttggttcttttatt 13518622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15018086 - 15018302
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  15018086 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 15018185  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15018186 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 15018285  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  15018286 aatttggttcttttatt 15018302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15019726 - 15019942
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  15019726 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 15019825  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15019826 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 15019925  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  15019926 aatttggttcttttatt 15019942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 39488596 - 39488812
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  39488596 cacgttttcaacttacaactcattttaaaccattaaatattctgagtttgctcttgagtcaaacagatgaattgtggagaatttcgtaagctttccaacg 39488695  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  39488696 agttaaagatcacctcaaacggacatctagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 39488795  T
Q  201 aatttgattcttttatt 217  Q
    |||| | ||||||||||    
T  39488796 aattaggttcttttatt 39488812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 9399084 - 9399281
Alignment:
Q  20 tcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9399084 tcattctacaccattaaatattccgaatttgctcttgagtcaaacagacgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 9399183  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  9399184 cggacatccagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 9399281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 13517922 - 13518086
Alignment:
Q  53 cttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatataaccaaaaca 152  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||||   ||||||| | ||| ||||||||    
T  13517922 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaaca 13518021  T
Q  153 agacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||| |||||||| ||||||||||    
T  13518022 agacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttatt 13518086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 11098718 - 11098521
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  11098718 cattttacaccatgatatatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11098620  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaa-ctcaaaattaatttgattcttttatt 217  Q
     |||  |||||||||| | |||| |  || |||||||||| | || ||||||||| ||||||| | |||||| |  ||||| |||||||||||||||||    
T  11098619 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttatt 11098521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 46690584 - 46690530
Alignment:
Q  163 atcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||||| ||||||||||||| || | |||||||||||  ||||||||||    
T  46690584 atcatgacctacgaaaataaaactttaaatttaaaattaatttagttcttttatt 46690530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 42872895 - 42873090
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  | |||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  42872895 cattttacaccatgatatatgccgattttgcttataagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 42872993  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     ||   |||||||||| | |||| |  || |||||||| | | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  42872994 cgggattccagagctctagatatgatgaatacaagacatatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 42873090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 8366345 - 8366129
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| ||||    
T  8366345 cacgttttcaacttacaactcattttaaaccgttaaatattccgaatttgctcttgagtcaaatagataaaatgtagagaattccgtaagctttcaaacg 8366246  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  8366245 agttaaagatcacctcaaacggacatccagagctccaaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 8366146  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  8366145 aatttggttcttttatt 8366129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 17277598 - 17277431
Alignment:
Q  50 gctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatataaccaaa 149  Q
    |||| ||||||||||||| ||||||||||||||| |||||| |||| || |||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  17277598 gctcctgagtcaaacagacgaaatgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaa 17277499  T
Q  150 acaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17277498 acaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttatt 17277431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 17278121 - 17278336
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||| | |||||| || |||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||| || |    
T  17278121 cacgtcttctacttatagctcattctacaccactaaatattccgaatttgcttttgagtcaaacagacgaaatgtagaaaatttcgtaagctttccaatg 17278220  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||| || |||||||    
T  17278221 agttaaagatcacctcaaacggacatctagagctccagatatagccaaaacaagacagacatatcatgacttacgaaaat-aaactttggacccaaaatt 17278319  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  17278320 aatttggttcttttatt 17278336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 6778228 - 6778316
Alignment:
Q  128 cagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||| |    ||||||||||| |||| ||||||||||| | ||||||||||    
T  6778228 cagagctccaaatatagccaaaacaagacagacatatcatgacatgtgtaaataaaacttagaac-caaaattaattcggttcttttatt 6778316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 17857380 - 17857185
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  17857380 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 17857282  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  |||||||||| | |||| |  || |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  17857281 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 17857185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 244884 - 245100
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  244884 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 244983  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  244984 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 245083  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  245084 aatttggttcttttatt 245100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29949825 - 29949609
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  29949825 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 29949726  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  29949725 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 29949626  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  29949625 aatttggttcttttatt 29949609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29951463 - 29951247
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  29951463 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 29951364  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  29951363 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 29951264  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  29951263 aatttggttcttttatt 29951247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 38936828 - 38936739
Alignment:
Q  128 cagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| ||||||||||    
T  38936828 cagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatt 38936739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 16780804 - 16780633
Alignment:
Q  45 aatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatataa 144  Q
    |||||| |||||||| ||||||| |||||| ||| || ||  |||| |||| || || | ||||||| ||||||  |||||||||||  |||  |||||     
T  16780804 aatttgttcttgagttaaacagacgaaatgcagataactttctaagatttccaaggactcaaagatcgcctcaatcggacatccagaattccggatatag 16780705  T
Q  145 ccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||||||| ||| ||||||| |||| |||||||||| |||||| |||||||||||  |||||||||||    
T  16780704 ccaaaacaagacaaacacatcatgaactacgaaaataaaacattgaac-caaaattaattcaattcttttatt 16780633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 21352695 - 21352749
Alignment:
Q  163 atcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||    
T  21352695 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttatt 21352749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 259081 - 258977
Alignment:
Q  109 atcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgat 208  Q
    ||||| |||| |||||||| ||||||| | ||||| || ||||||||||||  |  ||| || ||||||||||| |||| |||| ||||| ||||||| |    
T  259081 atcacgtcaattggacatctagagctcaagatatagccgaaacaagacagaggtgacatcacttacaaaaataacacttcgaac-caaaactaatttggt 258983  T
Q  209 tctttt 214  Q
    ||||||    
T  258982 tctttt 258977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 22300342 - 22300558
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||     
T  22300342 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaattccgtaagctttccaaca 22300441  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||  ||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  22300442 agttaaagatcacctcaaacggacatccagagctccggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 22300541  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  22300542 aatttggttcttttatt 22300558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24806730 - 24806946
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||    
T  24806730 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaacg 24806829  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24806830 agttaaagatcacctcaaacggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaatt 24806929  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  24806930 aatttggttcttttatt 24806946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18535748 - 18535964
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  18535748 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacg 18535847  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  18535848 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 18535947  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  18535948 aatttggttcttttatt 18535964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 24808598 - 24808802
Alignment:
Q  13 ttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatca 112  Q
    ||||| |||||| | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  24808598 ttacagctcattctgaaccattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatca 24808697  T
Q  113 cctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattctt 212  Q
    ||| ||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  24808698 cctgaaacggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttctt 24808797  T
Q  213 ttatt 217  Q
    |||||    
T  24808798 ttatt 24808802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 31974035 - 31974155
Alignment:
Q  97 aacgagttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaa 196  Q
    ||||||||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  31974035 aacgagttaaagatcacctcaaacggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaacccaa 31974134  T
Q  197 aattaatttgattcttttatt 217  Q
    |||||||| | ||||||||||    
T  31974135 aattaattaggttcttttatt 31974155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 22299808 - 22299712
Alignment:
Q  121 ggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  22299808 ggacatccaaagctccagatataggcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 22299712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 44793275 - 44793470
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  44793275 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 44793373  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  |||||||||| | |||| |  || |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  44793374 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 44793470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 44792703 - 44792637
Alignment:
Q  150 acaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||||||||||||||||    
T  44792703 acaagacagatacataatgacctacaaaaataacaatttgaac-caaaaataatttgattcttttatt 44792637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24157499 - 24157715
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  24157499 cacgttttcaacttacaactcattttaaaccattaaatattccgaattttctcttgagttaaacagatgaaatgtagagaatttcgtaagctttccaacg 24157598  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  24157599 agttaaagatcacctcaaacggacatccagagctccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 24157698  T
Q  201 aatttgattcttttatt 217  Q
    |||| | ||||||||||    
T  24157699 aattaggttcttttatt 24157715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36233546 - 36233330
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  36233546 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 36233447  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  36233446 agttaaagatcgcctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 36233347  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  36233346 aatttggttcttttatt 36233330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 48463043 - 48462830
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  48463043 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 48462944  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||   ||||||    
T  48462943 agttaaagatcacatcaaacggatatccagagctccaaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaatt 48462844  T
Q  201 aatttgattctttt 214  Q
    ||||||||||||||    
T  48462843 aatttgattctttt 48462830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 20190876 - 20191092
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| || |    
T  20190876 cacgttttcaacttacaactcattttaaaacattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagataatttagtaagctttccaaag 20190975  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  20190976 agttaaagatcacctcaaacggacatccaaagctccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaatt 20191075  T
Q  201 aatttgattcttttatt 217  Q
    |||| | ||||||||||    
T  20191076 aattaggttcttttatt 20191092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 20189244 - 20189459
Alignment:
Q  2 acgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacga 101  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |||| ||| |    
T  20189244 acgttttcaacttacaactcactttacaccattaaatattccgactttgctcttgagtcaaacagatgaaatgtagagaattttgtaaactttccaacaa 20189343  T
Q  102 gttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatta 201  Q
    ||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  20189344 gttgaagatcacctcaaacggacatccagaactccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaatta 20189443  T
Q  202 atttgattcttttatt 217  Q
    ||||| ||||||||||    
T  20189444 atttggttcttttatt 20189459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 36233845 - 36234018
Alignment:
Q  44 gaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatata 143  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  36233845 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatata 36233944  T
Q  144 accaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  36233945 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 36234018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 48463830 - 48464016
Alignment:
Q  28 aaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatc 127  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  48463830 aaccattaaaaattccgaatttgct--tgagtcaaacagatgaaatgtaaagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatc 48463927  T
Q  128 cagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||    
T  48463928 cagagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaa-tttgaacccaaaattattttggttcttttatt 48464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 20759328 - 20759128
Alignment:
Q  7 ttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaa 106  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||| || ||||        ||||||||||||| ||||  |||| |  |||| ||    
T  20759328 ttcaacttacagttcattttacaccattaaatattccgaatttgctcttcagacaaa--------atgtagagaattttgtaaactttccatagagtaaa 20759237  T
Q  107 agatcacctcaaatggacatccagagctccaaatataa--ccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatt 204  Q
    |||| ||||||   ||||||||||| ||||| |||||   ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||    
T  20759236 agattacctcactcggacatccagaactccatatatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaac-caaaattaatt 20759138  T
Q  205 tgattctttt 214  Q
    || |||||||    
T  20759137 tggttctttt 20759128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 40554120 - 40553925
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| | || |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  40554120 cattttacaccatgatatatgccgattttgcttctgagtccagcatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 40554022  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  |||||||||| | |||| |  || |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  40554021 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 40553925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 31390237 - 31390171
Alignment:
Q  150 acaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  31390237 acaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 31390171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 40554650 - 40554716
Alignment:
Q  150 acaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  40554650 acaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 40554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25531874 - 25531661
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||| |||| ||||    
T  25531874 cacgttttcaacttacaactcattttaaaccattaaatattctgaatttgctcttaagtcaaacagatgaaatgtagagaattccataagctttccaacg 25531775  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  25531774 agttaaagatcacctcaaacggacatccagagctccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 25531675  T
Q  201 aatttgattctttt 214  Q
    |||||| |||||||    
T  25531674 aatttggttctttt 25531661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5554237 - 5554453
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||    
T  5554237 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctatccaacg 5554336  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  5554337 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaatt 5554436  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  5554437 aatttggttcttttatt 5554453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 16346872 - 16346656
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  16346872 cacgtcttctacttacagctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaatttcgtaagctttccaacg 16346773  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  16346772 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 16346673  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  16346672 aatttggttcttttatt 16346656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 23460412 - 23460224
Alignment:
Q  29 accattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatcc 128  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||    
T  23460412 accattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggatatcc 23460313  T
Q  129 agagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  23460312 agagctccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 23460224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 47418422 - 47418638
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  47418422 cacgtcttctacttacagctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacg 47418521  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  47418522 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 47418621  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  47418622 aatttggttcttttatt 47418638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5553436 - 5553220
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||    
T  5553436 cacgtcttctacttacagctcattctgcaccattaaatatttcgaatttgctcttgaattaaacagatgaaatgtagagaatttcgtaagctttccaacg 5553337  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||    
T  5553336 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaatt 5553237  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  5553236 aatttggttcttttatt 5553220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 16022616 - 16022814
Alignment:
Q  19 ctcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaa 118  Q
    |||||| || |||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||| ||||||||    
T  16022616 ctcattctacaccactaaatattccgaatttgatcttgagtcaaacagacgaaatgtagagaacttcgtaagctttccaacgagttaaagaccacctcaa 16022715  T
Q  119 atggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    | |||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||    
T  16022716 acggacatccagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttatt 16022814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47566713 - 47566498
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||||||||||| |||||| || |||||||||||||  ||||||||||  |||||||||||| |||||||| ||||||| ||||| |||| ||||    
T  47566713 cacgtcttcaacttacagctcattctacaccattaaatattttgaatttgctc--gagtcaaacagacgaaatgtaaagaattttgtaagctttccaacg 47566616  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagac--atatcatgacctacaaaaataaaactttgaactcaaaa 198  Q
    | ||||||||||||||||  | ||||||| ||||||| ||||| |||| |||||||| ||  ||||||||| |||| ||||||||| ||| || ||||||    
T  47566615 aattaaagatcacctcaatcgaacatccatagctccagatatagccaagacaagacaaacatatatcatgatctacgaaaataaaa-ttttaaatcaaaa 47566517  T
Q  199 ttaatttgattcttttatt 217  Q
    |||| |  |||||||||||    
T  47566516 ttaaatcaattcttttatt 47566498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 32570674 - 32570510
Alignment:
Q  44 gaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatata 143  Q
    ||||||||||| |||||||||| |  ||||||||| ||||| ||||| |||| ||||| ||||||||||||||||    ||||||||| ||||| |||||    
T  32570674 gaatttgctctcgagtcaaacatacaaaatgtagataattttgtaagctttccaacgaattaaagatcacctcaatataacatccagaactccagatata 32570575  T
Q  144 accaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgatt 209  Q
       ||||||| | |||||||| |||| |||| ||||||| | || |||| ||||||||||| ||||    
T  32570574 gtaaaaacaaaatagacatataatgatctacgaaaataacatttagaac-caaaattaattcgatt 32570510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 25532821 - 25532867
Alignment:
Q  145 ccaaaacaagacagacatatcatgacctacaaaaataaaactttgaa 191  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25532821 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaa 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 2683576 - 2683507
Alignment:
Q  147 aaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||| ||||||||||| | |||| |||||||||||| |||||||||  ||||||||||||||| |||||||    
T  2683576 aaaataagacagacatgttatgatctacaaaaataacactttgaac-aaaaattaatttgatttttttatt 2683507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 55095 - 54879
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||||| |||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  55095 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacg 54996  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  54995 agttaaagatcacctcaaacggacatccagagctccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaatt 54896  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  54895 aatttggttcttttatt 54879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 542 - 746
Alignment:
Q  13 ttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacgagttaaagatca 112  Q
    ||||| |||||| | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  542 ttacagctcattctgaaccattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatca 641  T
Q  113 cctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattctt 212  Q
    ||| ||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  642 cctgaaacggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttctt 741  T
Q  213 ttatt 217  Q
    |||||    
T  742 ttatt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 86817 - 86605
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  86817 cacgttttcagcttacaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaaatttagagaatttcgtaagctttcaaacg 86718  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| |||||||  |||||||| ||||| ||||||||    ||| ||||||||||||||||||||||||| |||||| |||||||    
T  86717 agttaaagatcacctcaaacggacatcaggagctccatatatagccaaaaca----agagatatcatgacctacaaaaataaaacattgaacccaaaatt 86622  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||| ||||||    
T  86621 aatttggttcctttatt 86605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 646 - 724
Alignment:
Q  139 atataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  646 atatagccaaaacaagatagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatt 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 241284 - 241068
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||| ||| ||||| | |||||| || |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| |||| ||||    
T  241284 cacgtcttctacttatagctcattctacaccactaaatattccgaatttgctcctgagtcaaaaagacgaaatgtagagaacttcgtaagctttccaacg 241185  T
Q  101 agttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaatt 200  Q
    ||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  241184 agttaaagatcacctcaaacggacatccagagcttcagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaatt 241085  T
Q  201 aatttgattcttttatt 217  Q
    |||||| ||||||||||    
T  241084 aatttggttcttttatt 241068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 31762 - 31613
Alignment:
Q  68 tgaaatgtagagaatttcgtaagttttctaacgagttaaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcat 167  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  168 gacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||| ||||||| ||||||||| ||||||||||||| ||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttcttttatt 31613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1849 - 1954
Alignment:
Q  1 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaatttcgtaagttttctaacg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||| ||||    
T  1849 cacgttttcaaattacaactcattttaaaccattaaatattccgaatttgctcttgagtcagacagatgaaatgtagagaattccataagctttccaacg 1948  T
Q  101 agttaa 106  Q
    ||||||    
T  1949 agttaa 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 1962 - 2029
Alignment:
Q  148 aaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  1962 aaacaagacaga--tatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 2029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 17775 - 17679
Alignment:
Q  121 ggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  17775 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 17679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 27306 - 27210
Alignment:
Q  121 ggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  27306 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 27210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 22510 - 22421
Alignment:
Q  128 cagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  22510 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttatt 22421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 11265 - 11460
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  11265 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11363  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  | |||||||| | |||| |  || |||||||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  11364 cggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 11460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 4442 - 4247
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | || | |||| ||||||  ||||||||||| |||||||||||| |||||| |||   |||| ||||  ||||||||||||||||     
T  4442 cattttacaccatgatatctgccgattttgcttctgagtcaaacatatgaaatgtagatgaattt-gtaccctttcgaacgctttaaagatcacctcaat 4344  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  |  ||||||| |||||| |  || |||| ||||| | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  4343 cggagttgtagagctctaaatatgatgaatacaatacagatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 4247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 375259 - 375370
Alignment:
Q  105 aaagatcacctcaaatggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatt 204  Q
    ||||||||||||||   ||  |||||||||| | |||| |  || |||||||||| | || ||||||||||||||||| | ||||||| ||||| |||||    
T  375259 aaagatcacctcaatcagagttccagagctctagatatgaggaatacaagacagatacataatgacctacaaaaataacaatttgaac-caaaaataatt 375357  T
Q  205 tgattcttttatt 217  Q
    |||||||||||||    
T  375358 tgattcttttatt 375370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5437 - 5242
Alignment:
Q  21 cattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtaga-gaatttcgtaagttttctaacgagttaaagatcacctcaaa 119  Q
    ||||||| ||||| | |||| |||| ||||||  |||||| |||| |||||||||||| |||||| |||   |||| ||||  | ||||||||||||||     
T  5437 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 5339  T
Q  120 tggacatccagagctccaaatataaccaaaacaagacagacatatcatgacctacaaaaataaaactttgaactcaaaattaatttgattcttttatt 217  Q
     |||  ||||||| || | |||| |  || |||||||| | | || ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  5338 cggagttccagagttctagatatgatgaatacaagacacatacataatgacctacgaaaataacaatttgaac-caaaaataatttgattcttttatt 5242  T

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