View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_low_8 (Length: 484)
Name: NF20809_low_8
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 77 - 468
Target Start/End: Original strand, 8310147 - 8310539
Alignment:
| Q |
77 |
accgcaattccatttggcttttgaacggaagaacgcttcatctcgcttgacacacgccggatgatacgctttaggacaacccctagaaatgaaaagagag |
176 |
Q |
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| T |
8310147 |
accgcaattccatttggcttttgaacggaagaacgcttcatctcgcttaacacatgccggatgatacgctttaggacaacccctagaaatgaaaagagag |
8310246 |
T |
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| Q |
177 |
agaaagatttaataaattactacaaaacattgatgataatgattgaaattgaataacgcattttcgaccttattgcaatctaaaagccaatctaagatag |
276 |
Q |
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| T |
8310247 |
agaaagatttaataaattactacaaaacattgatgataatgattgaaattgaataacgcattttcgaccttattgcaatctaaaagccaatctaagataa |
8310346 |
T |
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| Q |
277 |
aatctataaaacacaaaatcaataattaagcagttaaagttccaattcaaaattattcca-tcttaatcgctaaaccctcactcaccggcgatcgcagag |
375 |
Q |
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| T |
8310347 |
aatctataaaacacaaaatcaataattaagcagttaaagttccaattcaaaattattccattcttaatcgctaaaccctcactcaccggcgatcgcagag |
8310446 |
T |
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| Q |
376 |
aacgagacttccaccgtcgaagcaaatgaagcaaacatcttcatcttccttcttgatctgcttcggcggaggagctactttcggagttccttt |
468 |
Q |
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| T |
8310447 |
aacgagacttccaccgtcgaagcaaatgaagcaaacatcttcatcttccttcttgatctgcttcggcggaggagctactttcggagttccttt |
8310539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 8293560 - 8293621
Alignment:
| Q |
100 |
aacggaagaacgcttcatctcgcttgacacacgccggatgatacgctttaggacaaccccta |
161 |
Q |
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| T |
8293560 |
aacggaaaaactcttcatctcgtttaacacacgccggatgatacgccttaggacaaccccta |
8293621 |
T |
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