View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_low_9 (Length: 461)

Name: NF20809_low_9
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_low_9
NF20809_low_9
[»] chr1 (8 HSPs)
chr1 (1-446)||(32601270-32601715)
chr1 (1-302)||(32583600-32583901)
chr1 (1-302)||(32633441-32633742)
chr1 (1-302)||(32659161-32659459)
chr1 (309-437)||(32633778-32633906)
chr1 (309-437)||(32659495-32659623)
chr1 (309-437)||(32583937-32584065)
chr1 (119-302)||(30252359-30252542)
[»] chr8 (4 HSPs)
chr8 (1-302)||(41149519-41149820)
chr8 (1-302)||(41175970-41176271)
chr8 (311-415)||(41176309-41176413)
chr8 (311-406)||(41149858-41149953)
[»] chr6 (1 HSPs)
chr6 (184-302)||(3733884-3734002)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 32601270 - 32601715
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  32601270 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaactctttttctagatctattggca 32601369  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32601370 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcgaaatcatttagatatttgtcaaaacctaa 32601469  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32601470 tttcaccgaagctagaacacgaaggtccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 32601569  T
Q  301 acctttttcctcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  32601570 acctttttcctcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccaaaaaaagttgacaaaacaaagatttt 32601669  T
Q  401 tgtttagccttgtcattgtcatgatcagcactatcaagaatgaaac 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32601670 tgtttagccttgtcattgtcatgatcagcactatcaagaatgaaac 32601715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 32583600 - 32583901
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||       |||||||||||||||    
T  32583600 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcaaaaaaggttttgaaactctttttctagatctattggca 32583699  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  32583700 atgagttcaaatacccatcattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatcattcagatatttgtcaaaaactaa 32583799  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32583800 tttcaccgaagctagaacacgaaggtccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccgcctttttccttc 32583899  T
Q  301 ac 302  Q
    ||    
T  32583900 ac 32583901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 32633441 - 32633742
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||       |||||||||||||||    
T  32633441 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcaaaaaaaattttgaaactctttttctagatctattggca 32633540  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||  |||    
T  32633541 atgagttcaaatacccatcattcccattttttaaactattctcttcgagagatttcctgagccaaccttcgaaatcattcagatatttgtcaaaaaataa 32633640  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32633641 tttcaccgaaggtagaacacgaaggtccaaacccagttcaactatcacagacttccacaacccttttcttgataccgcatcatacccacctttttccttc 32633740  T
Q  301 ac 302  Q
    ||    
T  32633741 ac 32633742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 32659161 - 32659459
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  |||||||||       |||||||||||||||    
T  32659161 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtccttcagatttgagcaaaaaaggttttgaaactctttttctagatctattggca 32659260  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    ||||||||||   ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  32659261 atgagttcaa---cccatcattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatcattcagatatttgtcaaaaactaa 32659357  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32659358 tttcactgaagctagaatacgaaggtccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccgcctttttccttc 32659457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 309 - 437
Target Start/End: Original strand, 32633778 - 32633906
Alignment:
Q  309 cctcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttttgtttagc 408  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||    
T  32633778 cctcaccgagcatcaccggcacaggcctcacattgcctctactacaattctcctttaggtaagccgaaaaaaattgacaaaacaaagatttttgtttagc 32633877  T
Q  409 cttgtcattgtcatgatcagcactatcaa 437  Q
    |||||||||||||||||||||||||||||    
T  32633878 cttgtcattgtcatgatcagcactatcaa 32633906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 309 - 437
Target Start/End: Original strand, 32659495 - 32659623
Alignment:
Q  309 cctcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttttgtttagc 408  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||       ||||| ||||||||||||||||||||||    
T  32659495 cctcaccgagcatgaccggcactggcctcacattgcctctactacaattctcctttaggtaagccgaaaaaagttgaaaaaacaaagatttttgtttagc 32659594  T
Q  409 cttgtcattgtcatgatcagcactatcaa 437  Q
    |||||||||||||||||||||||||||||    
T  32659595 cttgtcattgtcatgatcagcactatcaa 32659623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 309 - 437
Target Start/End: Original strand, 32583937 - 32584065
Alignment:
Q  309 cctcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttttgtttagc 408  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||       ||||| ||||||||||||||||||||||    
T  32583937 cctcaccgagcatgactggcacaggcctcacagtgcctctactacaattctcctttaggtaagccgaaaaaagttgaaaaaacaaagatttttgtttagc 32584036  T
Q  409 cttgtcattgtcatgatcagcactatcaa 437  Q
    |||||||||||||||||||| ||||||||    
T  32584037 cttgtcattgtcatgatcagaactatcaa 32584065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 302
Target Start/End: Complemental strand, 30252542 - 30252359
Alignment:
Q  119 cattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaatttcaccgaagctagaac 218  Q
    |||||| ||||||  ||||||| |||||| ||| ||| |||||||||||||| |||||| | |||||||| ||| || |||||||||| ||||| | |||    
T  30252542 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatcactcagatatttttcataaactaatttcactgaagccaaaac 30252443  T
Q  219 acgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttcac 302  Q
    |  ||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  30252442 attaaggtccaaacccagatcaactatcacagagtcccacaacccttttctcgatactgccgcataccctcctttttccttcac 30252359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 41149519 - 41149820
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||       |||||||||| || |    
T  41149519 tttatgatgttattcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaaggcttcgaaactcttcttctagatctatcggaa 41149618  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    |||| ||||||||||||| | |||||| |||  |||||||||||||  ||| ||| || ||||||||||| |||||| | |||||||| ||| |  ||||    
T  41149619 atgaattcaaatacccatgactcccatctttgcaactcttctcttcaaaagtttttctaagccaaccttcgaaatcactcagatatttttcatatactaa 41149718  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    |||||||||||| | || |||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  41149719 tttcaccgaagccaaaatacgaaggtccaaacccagttcatctatcacggaatcccacaacccttttctcgatatcgcatcatacccacctttttccttc 41149818  T
Q  301 ac 302  Q
    ||    
T  41149819 ac 41149820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 41175970 - 41176271
Alignment:
Q  1 tttatgatgttactcgattctaacgggacaaaatcatcatctttgtcctttagatttgagcataaaattttttgaaacnnnnnnnctagatctattggca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||   || ||||        |||||||||| ||||    
T  41175970 tttatgatgttactcgattctaatgggacaaaatcatcatcgttgtcctttagatttgagcataaaaggcttcgaaattctttttctagatctatcggca 41176069  T
Q  101 atgagttcaaatacccatcattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcaaaatcatttagatatttgtcaaaacctaa 200  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||  | | ||| ||||||||||||||||||||| | |||||||| ||| || ||||    
T  41176070 atgaattcaaatacccatgattcccattttttaaactcctctcttcaaatgttttgctgagccaaccttcaaaatcactcagatatttttcataaactaa 41176169  T
Q  201 tttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcatacccacctttttccttc 300  Q
    |||||| || || | |||| |||| |  ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  41176170 tttcacggatgccaaaacatgaaggttaaaacccatttcaattatcacagaatcccacagcccttttctcgataccgcatcatacccacctttttccttc 41176269  T
Q  301 ac 302  Q
    ||    
T  41176270 ac 41176271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 41176309 - 41176413
Alignment:
Q  311 tcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttttgtttagcct 410  Q
    ||||||||||| |||||||  |||||| || ||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||| |    
T  41176309 tcaccgagcatcaccggcattggcctcacaatgcctctactacaattctcctttaggtaaaccgaaaaaatttgacaaaacaaagatttctgtttagctt 41176408  T
Q  411 tgtca 415  Q
    |||||    
T  41176409 tgtca 41176413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 41149858 - 41149953
Alignment:
Q  311 tcaccgagcatgaccggcacaggcctcgcattgcctctactacaattctcctttaggtaaaccnnnnnnngttgacaaaacaaagatttttgttta 406  Q
    ||||| ||||| || |||||||||||| |||||||  ||||||||||||||||||||||||||        |||| ||||||||||||||||||||    
T  41149858 tcaccaagcatcactggcacaggcctcacattgcccttactacaattctcctttaggtaaaccccaaaaaattgagaaaacaaagatttttgttta 41149953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 3734002 - 3733884
Alignment:
Q  184 tatttgtcaaaacctaatttcaccgaagctagaacacgaagctccaaacccagttcaactatcacagaattccacaacccttttctcgataccgcatcat 283  Q
    ||||| ||| || ||||||||||| |||| | || |||||  ||||||||||||||| |||||||  ||| |||||||||| |||| |||| ||||||||    
T  3734002 tatttttcataaactaatttcaccaaagccaaaatacgaatgtccaaacccagttcatctatcacgaaatcccacaaccctattctagatatcgcatcat 3733903  T
Q  284 acccacctttttccttcac 302  Q
    ||| |||||||||||||||    
T  3733902 accaacctttttccttcac 3733884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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