View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2080_high_4 (Length: 365)
Name: NF2080_high_4
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2080_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 49361115 - 49361447
Alignment:
| Q |
12 |
atgagacgaaagcttagataagaatgttgtaaactgttcacccgcacgcgggggtttttatttgtactataaataaaaacatgataacatcatcattaat |
111 |
Q |
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| T |
49361115 |
atgagacgaaagcttagataagaatgttgtaaactgttcacccgcacgcgggg-tttttatttgtactataaataaaaacatgataacatcatcattaat |
49361213 |
T |
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| Q |
112 |
aactttacaccatcaatcacacgacacacgttacatttccattttccttttctatgtaaactccaatctttattcattcattcatattattctcttgctc |
211 |
Q |
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| T |
49361214 |
aactttacaccatcaatcacacgacacacgttacatttccattttccttttctatgtaaactccaatctttattcattcattcatattattctcttgctc |
49361313 |
T |
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| Q |
212 |
cccccttctctcacacgttcacgtgttttcctgccacagacaattcaaatacggaggaatagtgataataattaagacaaaccaaaatacaagagaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
49361314 |
cccccttctctcacacgttcacgtgttttcctgccacagacaattcaaatacggaggaatagtg---attattaagagaaaccaaaatacaagagaaaaa |
49361410 |
T |
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| Q |
312 |
attatggtctattcattgtcttcatttctgctctatg |
348 |
Q |
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| T |
49361411 |
attatggtctattcattgtcttcatttctgctctatg |
49361447 |
T |
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