View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2080_low_10 (Length: 312)
Name: NF2080_low_10
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2080_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 42313680 - 42313964
Alignment:
| Q |
18 |
aattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgtgacacaataggccatggttctcac |
117 |
Q |
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| T |
42313680 |
aattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgtgacacaataggccatggttctcac |
42313779 |
T |
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| Q |
118 |
actctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcag |
217 |
Q |
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| T |
42313780 |
actctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcag |
42313879 |
T |
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| Q |
218 |
cctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtgatgatgt |
302 |
Q |
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| T |
42313880 |
cctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgt |
42313964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 23040693 - 23040745
Alignment:
| Q |
250 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgatgatgt |
302 |
Q |
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| T |
23040693 |
gatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgt |
23040745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 42734729 - 42734781
Alignment:
| Q |
250 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgatgatgt |
302 |
Q |
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| T |
42734729 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgt |
42734781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 42717156 - 42717111
Alignment:
| Q |
250 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtg |
295 |
Q |
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| T |
42717156 |
gatgcagatattttggctggttttgaagctgccataagtgatggtg |
42717111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 42762750 - 42762713
Alignment:
| Q |
265 |
gctggttttgaagctgccataagtgacggtgatgatgt |
302 |
Q |
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| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgt |
42762713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 31108871 - 31108828
Alignment:
| Q |
103 |
ggccatggttctcacactctatcaacagctggtggtaatttcgt |
146 |
Q |
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| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgt |
31108828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 24266787 - 24266846
Alignment:
| Q |
175 |
aatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttgg |
234 |
Q |
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| T |
24266787 |
aatggtactgctaaaggtggatcaccaagatcacatgttgcagcctacaaagtgtgttgg |
24266846 |
T |
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