View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2080_low_11 (Length: 295)
Name: NF2080_low_11
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2080_low_11 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 22877505 - 22877800
Alignment:
| Q |
1 |
ctttactgtcttttcaattttctgtttcttcttcatttct-ctcgaccactttatcacagcttctatttttcttactctccttatggtgttattatgtgg |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| | |
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| T |
22877505 |
ctttactgtcttttcaattttctggttcttcttcatttcttctccacaactttatcacagcttctgtttttcttactctccttatggtgtttttatggga |
22877604 |
T |
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| Q |
100 |
ctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaattaagggtt |
199 |
Q |
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||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
22877605 |
ctttttctgacatgcccacaccacctaaaataagcttaccatattttatacaatgggagttatctcaactttttttctactgtttattcaattcagggtt |
22877704 |
T |
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| Q |
200 |
aaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagctatagg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22877705 |
aaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctatagg |
22877800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 22841963 - 22842256
Alignment:
| Q |
3 |
ttactgtcttttcaattttctgtttcttcttcatttct-ctcgaccactttatcacagcttctatttttcttactctccttatggtgttattatgtggct |
101 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| || |||| |||||||||| ||| |||||||||||||||| |||| |
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| T |
22841963 |
ttactgtcttttcaattttctggttcttcttcatttcttctccaccactttatcatagtttctgtttttcttaccctcgttatggtgttattatggggct |
22842062 |
T |
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| Q |
102 |
ttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaattaagggttaa |
201 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| |
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| T |
22842063 |
ttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcagggttaa |
22842162 |
T |
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| Q |
202 |
aaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagctatagg |
295 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22842163 |
aaactatgtaatggactaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctatagg |
22842256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 92 - 295
Target Start/End: Original strand, 22811961 - 22812163
Alignment:
| Q |
92 |
ttatgtggctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaat |
191 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | | |
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| T |
22811961 |
ttatgtggctttttctcacatgcccacaccacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctcta-tgtttatttagt |
22812059 |
T |
|
| Q |
192 |
taagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagcta |
291 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
22812060 |
tcagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgcta |
22812159 |
T |
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| Q |
292 |
tagg |
295 |
Q |
| |
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|||| |
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| T |
22812160 |
tagg |
22812163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 22870945 - 22871100
Alignment:
| Q |
1 |
ctttactgtcttttcaattttctgtttcttcttcatttct-ctcgaccactttatcacagcttctatttttcttactctccttatggtgttattatgtgg |
99 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||| || |||| |||||||||| ||| |||||||||||||||| || |
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| T |
22870945 |
ctttactgtcttttcaattttctggttcttcttcatttcttctccaccgctttatcatagtttctgtttttcttaccctcgttatggtgttattatgagg |
22871044 |
T |
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| Q |
100 |
ctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgg |
155 |
Q |
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||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
22871045 |
cttttccacacatgcccacaccacccaaaatgagcttaccatattttctacaatgg |
22871100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 22895331 - 22895533
Alignment:
| Q |
101 |
tttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaattaa------ |
194 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||| || |||||||| || ||||||||| |||| | |
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| T |
22895331 |
tttttcacatatgcccacacgacctaaaatgagcttaccattttttctacaatgg-agccatctcaactttttctctgctgtttatttaatttatttaat |
22895429 |
T |
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| Q |
195 |
---gggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagcta |
291 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
22895430 |
tcagggttaaaaaccatgtaatggactaattttaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgcta |
22895529 |
T |
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| Q |
292 |
tagg |
295 |
Q |
| |
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|||| |
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| T |
22895530 |
tagg |
22895533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22895265 - 22895336
Alignment:
| Q |
1 |
ctttactgtcttttcaattttctgtttcttcttcatttc-tctcgaccactttatcacagcttctatttttc |
71 |
Q |
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|||||||||||||||||||||||| |||||||||||||| | || |||||||||||| ||||||| |||||| |
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| T |
22895265 |
ctttactgtcttttcaattttctggttcttcttcatttcttgtccaccactttatcatagcttctgtttttc |
22895336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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