View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2080_low_13 (Length: 275)

Name: NF2080_low_13
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2080_low_13
NF2080_low_13
[»] chr4 (8 HSPs)
chr4 (18-266)||(44567042-44567289)
chr4 (115-255)||(11240210-11240349)
chr4 (115-264)||(30961142-30961290)
chr4 (18-90)||(44555585-44555657)
chr4 (18-53)||(34812723-34812758)
chr4 (33-78)||(28162672-28162717)
chr4 (32-93)||(39033633-39033694)
chr4 (33-93)||(24418117-24418176)
[»] chr5 (5 HSPs)
chr5 (123-253)||(16781564-16781692)
chr5 (18-93)||(2942052-2942127)
chr5 (18-53)||(31806641-31806676)
chr5 (55-93)||(6069250-6069288)
chr5 (184-266)||(42689762-42689844)
[»] chr3 (10 HSPs)
chr3 (123-248)||(17716345-17716469)
chr3 (123-248)||(19017574-19017698)
chr3 (19-90)||(9198059-9198130)
chr3 (35-93)||(35631461-35631519)
chr3 (20-93)||(30953-31026)
chr3 (35-93)||(42933650-42933708)
chr3 (33-93)||(27696264-27696324)
chr3 (19-52)||(33282361-33282394)
chr3 (33-93)||(54399570-54399630)
chr3 (33-93)||(54402340-54402400)
[»] chr6 (7 HSPs)
chr6 (123-248)||(8684748-8684872)
chr6 (176-264)||(8639263-8639351)
chr6 (19-93)||(25142256-25142330)
chr6 (33-93)||(34544422-34544482)
chr6 (33-92)||(1288436-1288495)
chr6 (34-91)||(13692520-13692577)
chr6 (37-93)||(34431397-34431452)
[»] chr7 (4 HSPs)
chr7 (18-93)||(24314171-24314245)
chr7 (178-227)||(48953629-48953678)
chr7 (28-92)||(87160-87224)
chr7 (33-93)||(19087404-19087464)
[»] chr1 (4 HSPs)
chr1 (33-93)||(1714047-1714107)
chr1 (144-214)||(721599-721668)
chr1 (19-93)||(30173407-30173481)
chr1 (139-207)||(38880817-38880884)
[»] chr8 (3 HSPs)
chr8 (18-53)||(28947367-28947402)
chr8 (19-93)||(35764709-35764783)
chr8 (33-93)||(32202765-32202825)
[»] scaffold0010 (1 HSPs)
scaffold0010 (18-93)||(166722-166797)
[»] chr2 (1 HSPs)
chr2 (18-53)||(38808819-38808854)
[»] scaffold0536 (1 HSPs)
scaffold0536 (19-56)||(4500-4537)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 44567042 - 44567289
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaatcataatttatatgcaccagctata 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44567042 cattaaatacatcatttttatgtcatttcatatttacaaactaatttaataattaattttatcaaacactacaaatcataatttatatgcatcagctata 44567141  T
Q  118 ccccaagattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagaggggaatg 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  44567142 ccccgagattccacatctatatcgttctcattcagaatattaaagacttg-ctagttgatcggaacatctctcttcatcacaccttaagagaggggaatg 44567240  T
Q  218 aatgtgcaaattattttactaaattaggtgctaattcatatgttcatct 266  Q
    |||||| | |||| |||||||||||||||||||||||||||| ||||||    
T  44567241 aatgtggagattactttactaaattaggtgctaattcatatgctcatct 44567289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 11240210 - 11240349
Alignment:
Q  115 ataccccaagattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagagggga 214  Q
    ||||||| ||||||||||||||  |||| |||||||| |||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||    
T  11240210 ataccccgagattccacatctacgtcgtgctcattcaaaatattaaagacttgt-tagttgatcggaacatctctctccatcacaccttaagagagggga 11240308  T
Q  215 atgaatgtgcaaattattttactaaattaggtgctaattca 255  Q
    |  |||||    |||| ||| ||||||||||||||| ||||    
T  11240309 accaatgtttggattactttgctaaattaggtgctagttca 11240349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 30961290 - 30961142
Alignment:
Q  115 ataccccaagattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagagggga 214  Q
    ||||||| |||| ||||| |||   ||| ||||| |||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  30961290 ataccccgagataccacacctacgccgtcctcatccagaatataaaggacttg-ctaattgttcggaacatctctcttcatcacaccttaagagagggga 30961192  T
Q  215 atgaatgtgcaaattattttactaaattaggtgctaattcatatgttcat 264  Q
    |  ||||||   |||  ||| ||||||| |||||||||||| ||| ||||    
T  30961191 accaatgtgtggatttctttgctaaattgggtgctaattcagatgctcat 30961142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 44555657 - 44555585
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactaca 90  Q
    ||||||||| |||||||||||||||||||||||||| ||  || ||||||   |||||||| |||||||||||    
T  44555657 cattaaatatatcacttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacactaca 44555585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 34812758 - 34812723
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatattta 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  34812758 cattaaatacatcacttttatgtcatttcatattta 34812723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 28162717 - 28162672
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaatttta 78  Q
    |||||||||||||||||||||  |||||||| |||| |||||||||    
T  28162717 ttttatgtcatttcatatttatcaactaattcaacagttaatttta 28162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 39033633 - 39033694
Alignment:
Q  32 cttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||||||||||||||||||  ||  || ||||||   |||||||||||||||||||||||    
T  39033633 cttttatgtcatttcatatttttaagttagtttaaccgataattttatcaaacactacaaat 39033694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 24418176 - 24418117
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||||||| || ||| || ||||| ||| |||| ||||||||||||||    
T  24418176 ttttatgtcatttcatatttataagctacttgaacaactaa-tttaccaaacactacaaat 24418117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 16781564 - 16781692
Alignment:
Q  123 agattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagaggggaatgaatgt 222  Q
    ||||||||||||||   ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  16781564 agattccacatctacgccgttctcattc-gaatattaaagacttg-ctagttgatcggaacatctctcttcatcacaccttaagagaggggaatcaatgt 16781661  T
Q  223 gcaaattattttactaaattaggtgctaatt 253  Q
    |   |||| ||| ||||||| | ||||||||    
T  16781662 gtggattactttgctaaattggatgctaatt 16781692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 2942052 - 2942127
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||| |||||||||||||||||| ||||||| ||  || || ||| | |||||||| ||||| ||||||||    
T  2942052 cattaaatatatcacttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaat 2942127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 31806676 - 31806641
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatattta 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31806676 cattaaatatatcacttttatgtcatttcatattta 31806641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 6069288 - 6069250
Alignment:
Q  55 aaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  6069288 aaactaattcaacaattaattttatcaaacacaacaaat 6069250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 42689844 - 42689762
Alignment:
Q  184 atctctcttcatcacaccttaagagaggggaatgaatgtgcaaattattttactaaattaggtgctaattcatatgttcatct 266  Q
    |||||||| |||||||| ||||||||||||||  |||||||  |||  ||| | || || |||||||||||| ||||||||||    
T  42689844 atctctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatct 42689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 17716469 - 17716345
Alignment:
Q  123 agattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagaggggaatgaatgt 222  Q
    |||||||||||||||  |||||| ||||| || |||||||| ||| ||| |  ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  17716469 agattccacatctatgccgttcttattcaaaacattaaagatttg-ctagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgt 17716371  T
Q  223 gcaaattattttactaaattaggtgc 248  Q
    ||| |||||||| ||||||| |||||    
T  17716370 gcagattattttgctaaattgggtgc 17716345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 19017698 - 19017574
Alignment:
Q  123 agattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagaggggaatgaatgt 222  Q
    |||||||||||||||  |||||| ||||| || |||||||| ||| ||| |  ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  19017698 agattccacatctatgccgttcttattcaaaacattaaagatttg-ctagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgt 19017600  T
Q  223 gcaaattattttactaaattaggtgc 248  Q
    ||| |||||||| ||||||| |||||    
T  19017599 gcagattattttgctaaattgggtgc 19017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 9198130 - 9198059
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactaca 90  Q
    |||||||| || | |||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||    
T  9198130 attaaatatattatttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactaca 9198059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 35631461 - 35631519
Alignment:
Q  35 ttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||| |||||||  |||||||||||| |||||||||||||||||| ||||||    
T  35631461 ttatgtcattttatatttatcaactaatttaaccattaattttatcaaacaccacaaat 35631519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 30953 - 31026
Alignment:
Q  20 ttaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||| |||| ||||||||||||||||||||  ||| ||||||||| | ||||||||| ||| |||||||||    
T  30953 ttaaatatatcatttttatgtcatttcatattttaaaattaatttaaccactaattttattaaatactacaaat 31026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 42933708 - 42933650
Alignment:
Q  35 ttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||| ||||||| ||||||||||||   ||||||||||||||||| ||||||    
T  42933708 ttatgtcatttaatatttataaactaatttaattgttaattttatcaaacacaacaaat 42933650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 27696324 - 27696264
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||||||||||||||| || ||  ||||| ||| ||||||||||||||| |||||||||    
T  27696324 ttttatgtcatttcatatataaaagttaattcaaccattaattttatcaaatactacaaat 27696264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33282394 - 33282361
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatattt 52  Q
    |||||||| |||||||||||||||||||||||||    
T  33282394 attaaatatatcacttttatgtcatttcatattt 33282361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 54399570 - 54399630
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||| ||||||| || |||||| |||  || ||| |||||||||||||||||    
T  54399570 ttttatgtcatttgatatttataagctaattcaactgttgattctatcaaacactacaaat 54399630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 54402340 - 54402400
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||| |||||| ||||||| || |||||||||   ||||||||||||||||||| ||||    
T  54402340 ttttatatcattttatatttataagctaatttaaatgttaattttatcaaacactataaat 54402400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 8684748 - 8684872
Alignment:
Q  123 agattccacatctatatcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagaggggaatgaatgt 222  Q
    ||||||||||||||    ||||| ||||| || |||||||| ||| ||| |  |||||||  |||||||||||||||||||||||||||| ||| |||||    
T  8684748 agattccacatctacgctgttcttattcaaaacattaaagatttg-ctagtcgatcggaatttctctcttcatcacaccttaagagagggaaatcaatgt 8684846  T
Q  223 gcaaattattttactaaattaggtgc 248  Q
    |||| ||||||| ||||||| |||||    
T  8684847 gcaatttattttgctaaattgggtgc 8684872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 8639263 - 8639351
Alignment:
Q  176 atcggaacatctctcttcatcacaccttaagagaggggaatgaatgtgcaaattattttactaaattaggtgctaattcatatgttcat 264  Q
    ||||||||||||||||||||||| | | ||||||||||||| |||||||| |||| ||| ||||||| ||||||| |||| ||| ||||    
T  8639263 atcggaacatctctcttcatcacgcttcaagagaggggaatcaatgtgcagattactttgctaaattgggtgctagttcagatgctcat 8639351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 25142330 - 25142256
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||||| ||||||||||| |||||||||||||| ||| || || ||| ||||||||||||||| | |||||||    
T  25142330 attaaatatatcacttttatatcatttcatatttataaaatagttcaaccattaattttatcaaatattacaaat 25142256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 34544422 - 34544482
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||||||| || ||| || ||| | ||||| |||||||||||||||||    
T  34544422 ttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaat 34544482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 1288436 - 1288495
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaa 92  Q
    ||||||||||||||||||||| ||  || || |||  |||||||||||||||||||||||    
T  1288436 ttttatgtcatttcatatttataagttatttcaaccgttaattttatcaaacactacaaa 1288495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 13692520 - 13692577
Alignment:
Q  34 tttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaa 91  Q
    ||||||||||||||||||||  ||||| || ||| | ||||||||||||| |||||||    
T  13692520 tttatgtcatttcatatttattaactacttcaaccactaattttatcaaatactacaa 13692577  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 34431397 - 34431452
Alignment:
Q  37 atgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||| |||||| || ||| |||||||||  ||||||||||||||    
T  34431397 atgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaat 34431452  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 24314245 - 24314171
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| |||  ||||||||| |||| |||||||||    
T  24314245 cattaaatatatcacttttatgccatttcatatttacaaactaattcaaccgttaattttaccaaa-actacaaat 24314171  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 48953629 - 48953678
Alignment:
Q  178 cggaacatctctcttcatcacaccttaagagaggggaatgaatgtgcaaa 227  Q
    |||||||||||||||||||||||  |||||||||||||| || |||||||    
T  48953629 cggaacatctctcttcatcacactctaagagaggggaatcaacgtgcaaa 48953678  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 87224 - 87160
Alignment:
Q  28 atcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaa 92  Q
    |||| |||||||||||||||||||||||| |||||| |||   ||||||||  ||||||||||||    
T  87224 atcatttttatgtcatttcatatttacaatctaattcaaccgctaattttacaaaacactacaaa 87160  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 19087404 - 19087464
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||||||  ||| ||||| |||  |||||||||||||| |||| ||||    
T  19087404 ttttatgtcatttcatatttttaaattaattcaaccgttaattttatcaaatactataaat 19087464  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 1714107 - 1714047
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||||||| |||||| || |||  ||||||||| ||||||||||||||    
T  1714107 ttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaat 1714047  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 721599 - 721668
Alignment:
Q  144 ctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaagagagggga 214  Q
    |||||||||||||| || || ||| ||||||  ||||||| ||||||| |||||||| |||||||||||||    
T  721599 ctcattcagaatataaaggatttg-ctaattgttcggaacttctctctccatcacacattaagagagggga 721668  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 30173481 - 30173407
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||||| || | ||||||||||||||||||||| |||||| || |||   |||||||| |||||| |||||||    
T  30173481 attaaatatattatttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaat 30173407  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 38880817 - 38880884
Alignment:
Q  139 tcgttctcattcagaatattaaagacttgtctaattaatcggaacatctctcttcatcacaccttaaga 207  Q
    |||| |||||||||||||| || || ||| ||||||  ||||||||||||||| |||||||| ||||||    
T  38880817 tcgtcctcattcagaatataaaggatttg-ctaattgttcggaacatctctctccatcacacattaaga 38880884  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 28947402 - 28947367
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatattta 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  28947402 cattaaatacatcacttttatgtcatttcatattta 28947367  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 35764709 - 35764783
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    |||||||| || | ||||||||||||||||||||| |||||| || |||   |||||||| |||||||| |||||    
T  35764709 attaaatatattatttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaat 35764783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 32202765 - 32202825
Alignment:
Q  33 ttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||||||||||||| |   |||| |||||| | |||||||||||||| ||||||||    
T  32202765 ttttatgtcatttcatattcatggactagtttaactactaattttatcaaacgctacaaat 32202825  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 166722 - 166797
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatatttacaaactaatttaacaattaattttatcaaacactacaaat 93  Q
    ||||||||| |||| || |||||||||||||||||| || ||| || |||   |||||||| ||||||||||||||    
T  166722 cattaaatatatcatttctatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaat 166797  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 38808854 - 38808819
Alignment:
Q  18 cattaaatacatcacttttatgtcatttcatattta 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  38808854 cattaaatatatcacttttatgtcatttcatattta 38808819  T

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Target: scaffold0536 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 4500 - 4537
Alignment:
Q  19 attaaatacatcacttttatgtcatttcatatttacaa 56  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  4500 attaaatatatcagttttatgtcatttcatatttacaa 4537  T

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