View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2080_low_14 (Length: 274)
Name: NF2080_low_14
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2080_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 14182614 - 14182860
Alignment:
| Q |
17 |
cataaaggtttaacacatataaatagagaaaaatagataatagaacttagaagagaatgaatacctgtaactgattattagcaaaattaatcacaaccaa |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14182614 |
cataaaggtttaacacata--aatagagaaaaatagataatagaacttagaagagaatgaatacctgtaactgattattagcaaaattaatcacaaccaa |
14182711 |
T |
|
| Q |
117 |
gcccttcatcttctcaacctcctcagggaaaatcctcaacttcatcccagaaaaatcaactttctcaacaacctcaccctcttcacctttcctcaacgac |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14182712 |
acccttcatcttctcaaccccctcagggaaaatcctcaacttcatcccagaaaaatcaactttctcaacaacctcaccctcttcacctttcctcaacaac |
14182811 |
T |
|
| Q |
217 |
ccaccaaccccttcatttacatcctcatcaccaacctcttcattcatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14182812 |
ccaccaaccccttcatttacatcctcatcaccaacctcttccttcatct |
14182860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University