View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2080_low_3 (Length: 504)

Name: NF2080_low_3
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2080_low_3
NF2080_low_3
[»] chr1 (3 HSPs)
chr1 (16-493)||(50975225-50975698)
chr1 (358-423)||(6919881-6919946)
chr1 (358-423)||(38239931-38239996)
[»] chr4 (3 HSPs)
chr4 (327-423)||(37618695-37618789)
chr4 (425-479)||(8541356-8541410)
chr4 (363-418)||(8541278-8541331)
[»] chr8 (4 HSPs)
chr8 (425-479)||(23820691-23820745)
chr8 (425-479)||(40172861-40172915)
chr8 (363-418)||(23820613-23820666)
chr8 (363-418)||(40172940-40172993)
[»] chr3 (2 HSPs)
chr3 (352-397)||(19766377-19766422)
chr3 (352-393)||(17682135-17682176)
[»] chr7 (1 HSPs)
chr7 (293-341)||(84242-84286)
[»] chr5 (1 HSPs)
chr5 (352-394)||(35560319-35560362)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 50975225 - 50975698
Alignment:
Q  16 aggaacaattatcatgccgaccctgcttgtgtgaagtcaacaaaaaacagcgtgtccgtgaaggaacatcggcaaactttgtttcgcatatatggtttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50975225 aggaacaattatcatgccgaccctgcttgtgtgaagtcaacaaaaaacagcgtgtccgtgaaggaacatcggcaatctttgtttcgcatatatggtttga 50975324  T
Q  116 aagttgtcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaagatgactagatttgggcatgttgaggctgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50975325 aagttgtcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaagatgactagatttgggcatgttgaggctgg 50975424  T
Q  216 cttaacaatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagctagaacagcttttttgctagcttagtttcaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  50975425 cttaacaatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagctagaacagcttttttgctagcttagtttca-- 50975522  T
Q  316 atatacaaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttccactttcacagtcgtgtatttctcttctca 415  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  50975523 --atacaaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatgtcttttccactttcacaatcgtgtatttctcttctca 50975620  T
Q  416 tctctcgctaccgttagcggtggattttttcctgcggcctcctctctagctctctccgtccagtcaccgtattttcat 493  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50975621 tctctcgccaccgtcagcagtggattttttcctgcggcctcctctctagctctctccgtccagtcaccgtattttcat 50975698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 6919881 - 6919946
Alignment:
Q  358 aaaatttcactctcttccata--tcttttccactttcacagtcgtgtatttctcttctcatctctcgc 423  Q
    |||||||||||||||||||||  ||||||| ||||||||| |||||  |||||| ||||||| |||||    
T  6919881 aaaatttcactctcttccatacgtcttttctactttcacaatcgtg--tttctcctctcatccctcgc 6919946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 38239996 - 38239931
Alignment:
Q  358 aaaatttcactctcttccata--tcttttccactttcacagtcgtgtatttctcttctcatctctcgc 423  Q
    |||||||||||||||||||||  ||||||| ||||||||| |||||  |||||| ||||||| |||||    
T  38239996 aaaatttcactctcttccatacgtcttttctactttcacaatcgtg--tttctcctctcatccctcgc 38239931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 37618789 - 37618695
Alignment:
Q  327 tctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttccactttcacagtcgtgtatttctcttctcatctctcgc 423  Q
    |||||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||  ||||||||| ||||||| |||||    
T  37618789 tctctctctctctctctccacgccaatgaagaaaatttcactctcttccatgtcttttctactttcaccgtc--gtatttctcctctcatccctcgc 37618695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 8541356 - 8541410
Alignment:
Q  425 accgttagcggtggattttttcctgcggcctcctctctagctctctccgtccagt 479  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8541356 accgtcagcggtggattttctcctgcggcctcctctctagctctctccgtccagt 8541410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 8541278 - 8541331
Alignment:
Q  363 ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttctcatct 418  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  8541278 ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttctcatct 8541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 23820691 - 23820745
Alignment:
Q  425 accgttagcggtggattttttcctgcggcctcctctctagctctctccgtccagt 479  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23820691 accgtcagcggtggattttctcctgcggcctcctctctagctctctccgtccagt 23820745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 40172915 - 40172861
Alignment:
Q  425 accgttagcggtggattttttcctgcggcctcctctctagctctctccgtccagt 479  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40172915 accgtcagcggtggattttctcctgcggcctcctctctagctctctccgtccagt 40172861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 23820613 - 23820666
Alignment:
Q  363 ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttctcatct 418  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  23820613 ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttctcatct 23820666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 40172993 - 40172940
Alignment:
Q  363 ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttctcatct 418  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  40172993 ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttctcatct 40172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 19766377 - 19766422
Alignment:
Q  352 atgaagaaaatttcactctcttccatatcttttccactttcacagt 397  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||    
T  19766377 atgaagaaaatttcaatctctcccatgtcttttccactttcacagt 19766422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 17682135 - 17682176
Alignment:
Q  352 atgaagaaaatttcactctcttccatatcttttccactttca 393  Q
    ||||||||||||||| ||||| |||| |||||||||||||||    
T  17682135 atgaagaaaatttcaatctctcccatgtcttttccactttca 17682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 84286 - 84242
Alignment:
Q  293 ttttttgctagcttagtttcaatatatacaaccatctctctcacttcct 341  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||    
T  84286 ttttttgctagcttagtttcaata----caaccatctctctcacttcct 84242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 35560362 - 35560319
Alignment:
Q  352 atgaagaaaatttcactctcttccat-atcttttccactttcac 394  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  35560362 atgaagaaaatttcactatcttccatcatcttttccactttcac 35560319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University