View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2080_low_4 (Length: 448)
Name: NF2080_low_4
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2080_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 53249302 - 53249107
Alignment:
| Q |
17 |
atatgcgttaagctacgtattaaggtcgttcatgagacatgatcaacgtcttcaaaatatcatactcggtatttttgcatatctgcttcagatatgatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53249302 |
atatgcgttaagctacgtattaaggtcgttcatgagacatgatcaacgtcttcaaaatatcatactcggtatttttgcatatctgctttagatatgatac |
53249203 |
T |
|
| Q |
117 |
tggaaatgcgacaggggaactatatgactgattctgtataaacatttgcaaaaaagtttatttagcaagtaaataaaatatggagtgcattttttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53249202 |
tggaaatgcgacaggggaactatatgactgattctgtataaacatttgcaaaaaagtttatttagcaagtaaataaaacatggagtgcattttttg |
53249107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 309 - 437
Target Start/End: Complemental strand, 53249109 - 53248981
Alignment:
| Q |
309 |
ttgaacagtttaagacagttcattcaattaaggtagtatacttttgcatttagttgattatgcatcagtgatttaaagacgaagagattgctactgtgta |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53249109 |
ttgaacagtttaagacatctcattcaattaaggtagtatacttttgcatttaattgattatgcatcagtgatttaaagacgaagagattgctactgtgta |
53249010 |
T |
|
| Q |
409 |
ccatcttgttgtctatatacaatttctct |
437 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53249009 |
ccatcttgttgtctatatacaatttctct |
53248981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 177 - 371
Target Start/End: Complemental strand, 44743684 - 44743491
Alignment:
| Q |
177 |
tttagcaagtaaataaaatatggagtgcattttttgcaggaaaatgtggcagctgttttttctgagtttgattatttttctaaaccgattcggaaaatta |
276 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
44743684 |
tttagcaagtaaataaattacggagtgcattttttgcaggaaaatgttgcagctgttttt-ctgtgtttggttatttttctaaacctattcggagaatta |
44743586 |
T |
|
| Q |
277 |
atgtgcaaaactggtggatgaaaatgtcttgattgaacagtttaagacagttcattcaattaaggtagtatacttttgcatttagttgattatgc |
371 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44743585 |
atttgcaaaattgggagatgaaaatgtcttgattgaacaatttaagacagttcattcgattaagttagtatacttttgcatttagttgattatgc |
44743491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University