View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2080_low_5 (Length: 430)

Name: NF2080_low_5
Description: NF2080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2080_low_5
NF2080_low_5
[»] chr2 (12 HSPs)
chr2 (71-412)||(3220422-3220763)
chr2 (236-410)||(12504854-12505032)
chr2 (236-410)||(14680894-14681072)
chr2 (236-412)||(39587452-39587646)
chr2 (72-134)||(12505163-12505225)
chr2 (72-134)||(14680701-14680763)
chr2 (72-134)||(39587777-39587839)
chr2 (19-71)||(3228271-3228323)
chr2 (128-181)||(12505091-12505144)
chr2 (128-181)||(14680782-14680835)
chr2 (128-181)||(39587705-39587758)
chr2 (19-70)||(3338651-3338702)
[»] chr1 (10 HSPs)
chr1 (232-397)||(52887853-52888022)
chr1 (236-410)||(52608987-52609165)
chr1 (237-412)||(29887085-29887263)
chr1 (72-133)||(52608794-52608855)
chr1 (72-134)||(52888149-52888210)
chr1 (128-181)||(52608875-52608928)
chr1 (128-181)||(52888077-52888130)
chr1 (266-370)||(13728701-13728805)
chr1 (94-134)||(29887395-29887435)
chr1 (128-172)||(29887332-29887376)
[»] scaffold0014 (6 HSPs)
scaffold0014 (236-410)||(173647-173825)
scaffold0014 (236-412)||(143851-144031)
scaffold0014 (72-134)||(144162-144224)
scaffold0014 (72-134)||(173956-174018)
scaffold0014 (128-181)||(173884-173937)
scaffold0014 (128-181)||(144090-144143)
[»] chr8 (8 HSPs)
chr8 (236-410)||(44198031-44198209)
chr8 (236-412)||(20793571-20793751)
chr8 (236-412)||(23928942-23929122)
chr8 (72-134)||(23928749-23928811)
chr8 (72-134)||(44198340-44198402)
chr8 (128-181)||(23928830-23928883)
chr8 (128-181)||(44198268-44198321)
chr8 (134-181)||(20793810-20793857)
[»] chr7 (15 HSPs)
chr7 (236-410)||(48513409-48513587)
chr7 (236-412)||(3718203-3718383)
chr7 (236-412)||(42105277-42105457)
chr7 (236-412)||(48727851-48728031)
chr7 (72-134)||(42105588-42105650)
chr7 (72-134)||(48513216-48513278)
chr7 (72-134)||(3718010-3718072)
chr7 (72-134)||(48727658-48727720)
chr7 (128-181)||(42105516-42105569)
chr7 (128-181)||(48513297-48513350)
chr7 (128-181)||(48727739-48727792)
chr7 (128-181)||(3718091-3718144)
chr7 (312-364)||(34529808-34529860)
chr7 (312-364)||(45574882-45574934)
chr7 (312-361)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (236-410)||(29651908-29652086)
chr6 (72-133)||(29652218-29652279)
chr6 (128-181)||(29652145-29652198)
[»] chr5 (12 HSPs)
chr5 (236-410)||(36678940-36679118)
chr5 (236-410)||(36662660-36662838)
chr5 (236-412)||(43560279-43560465)
chr5 (266-389)||(23203822-23203945)
chr5 (72-134)||(36662969-36663031)
chr5 (72-133)||(36678747-36678808)
chr5 (72-132)||(23198492-23198552)
chr5 (128-181)||(36662897-36662950)
chr5 (128-181)||(36678828-36678881)
chr5 (128-181)||(43560524-43560577)
chr5 (128-181)||(23198573-23198626)
chr5 (236-267)||(23198685-23198716)
[»] chr3 (10 HSPs)
chr3 (236-410)||(38327668-38327846)
chr3 (236-412)||(46073482-46073662)
chr3 (236-412)||(55488776-55488956)
chr3 (72-134)||(46073793-46073855)
chr3 (72-133)||(38327475-38327536)
chr3 (72-134)||(55489087-55489149)
chr3 (128-181)||(38327556-38327609)
chr3 (128-181)||(46073721-46073774)
chr3 (128-181)||(55489015-55489068)
chr3 (312-364)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (236-412)||(223-409)
scaffold1284 (128-181)||(468-521)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 71 - 412
Target Start/End: Complemental strand, 3220763 - 3220422
Alignment:
Q  71 catagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagactctgaaattgcgcgaattcgagcaatgatttcagcga 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220763 catagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagactctgaaattgcgcgaattcgagcaatgatttcagcga 3220664  T
Q  171 caatgcgtgaagacgcgttcgtgtgaagcactaactatgggaagagcaagattctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220663 caatgcgtgaagacgcgttcgtgtgaagcactaactatgggaagagcaagaatctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacg 3220564  T
Q  271 agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagc 370  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220563 agtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagc 3220464  T
Q  371 aggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3220463 aggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 3220422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Complemental strand, 12505032 - 12504854
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  12505032 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 12504933  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  12504932 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 12504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 14680894 - 14681072
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14680894 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 14680993  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  14680994 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 14681072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 39587646 - 39587452
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaaccacg----agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    ||||||||||| |||| |||||||||||||||       ||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  39587646 tgaagcagtaattatggatctcatcccaaacctgccctaagtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 39587547  T
Q  332 gcagagcaaagaatcttgtt--------------cttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| ||||||||||              |||||||||||||||||||| | |||| |||||| |||||||||||| |||||||||||||    
T  39587546 gcagagcaatgaatcttgttcttcgaatcttgttcttcccattcagtgtaagcaagattctccgttccagcttcgcgcgctgcatctgtgagata 39587452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 12505225 - 12505163
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505225 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 12505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 14680701 - 14680763
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680701 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 14680763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 39587839 - 39587777
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39587839 atagggtcaaactcctcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 39587777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3228323 - 3228271
Alignment:
Q  19 atcatgaatcaacgacaaaaattagccaaatgcatgcatttaagaaagtaatc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3228323 atcatgaatcaacgacaaaaattagccaaatgcatgcatttaagaaagtaatc 3228271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 12505144 - 12505091
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  12505144 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 12505091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 14680782 - 14680835
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  14680782 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 14680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 39587758 - 39587705
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  39587758 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 39587705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3338702 - 3338651
Alignment:
Q  19 atcatgaatcaacgacaaaaattagccaaatgcatgcatttaagaaagtaat 70  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3338702 atcatgaatcaacgaaaaaaaatagccaaatgcatgcatttaagaaagtaat 3338651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 232 - 397
Target Start/End: Complemental strand, 52888022 - 52887853
Alignment:
Q  232 tgcatgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatcc 327  Q
    |||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52888022 tgcatgaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatcc 52887923  T
Q  328 aggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgc 397  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  52887922 aggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgtgcgc 52887853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 52608987 - 52609165
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  52608987 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 52609086  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  52609087 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 52609165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 412
Target Start/End: Complemental strand, 29887263 - 29887085
Alignment:
Q  237 gaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtg 332  Q
    ||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||    
T  29887263 gaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtg 29887164  T
Q  333 cagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  29887163 cagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgcgcgctgcat-tgtgagata 29887085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 52608794 - 52608855
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608794 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 52608855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 52888210 - 52888149
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52888210 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggt-cctgtgagagact 52888149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 52608875 - 52608928
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  52608875 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 52608928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 52888130 - 52888077
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  52888130 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 52888077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
Q  266 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 365  Q
    ||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| |||    
T  13728805 ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg 13728706  T
Q  366 taagc 370  Q
    |||||    
T  13728705 taagc 13728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 29887435 - 29887395
Alignment:
Q  94 gtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887435 gtgcttcaagaacaacttcaattaggtccctgtgagagact 29887395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 29887376 - 29887332
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgaca 172  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  29887376 agagactctgaaattgcgcgaattcgagcaatgaattcggcgaca 29887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Complemental strand, 173825 - 173647
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  173825 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 173726  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  173725 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 173647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 144031 - 143851
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | |||||| ||||||||||||| |||||||| || |||||| | ||||||||||||||||||||    
T  144031 tgaagcagtaactatggatctcatcccaaacctgccaagagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggt 143932  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    || |||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||| |||||||||||||    
T  143931 gctgagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcacgctgcatctgtgagata 143851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 144224 - 144162
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144224 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 144162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 174018 - 173956
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  174018 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 173956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 173937 - 173884
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  173937 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 173884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 144143 - 144090
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  144143 agagactctgaaattgcgcgaattcgagcaatgaattcaacgacagtgcgtgaa 144090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Complemental strand, 44198209 - 44198031
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  44198209 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 44198110  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  44198109 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 44198031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 20793751 - 20793571
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  20793751 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggt 20793652  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||| |||||||||||||    
T  20793651 gcagagcaatgaatcttgttcttcccattcagtgtaagcatgattctccgttccagcttcgcgcgctgcatctgtgagata 20793571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 236 - 412
Target Start/End: Original strand, 23928942 - 23929122
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||    
T  23928942 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggt 23929041  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||||||| |||||||||||||    
T  23929042 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattatccgttccagcttcgcgcgctgcatctgtgagata 23929122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 23928749 - 23928811
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928749 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 23928811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 44198402 - 44198340
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198402 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 44198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 23928830 - 23928883
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  23928830 agagactctgaaattgtgcgaattcgagcaatgaattcagcgacagtgcgtgaa 23928883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 44198321 - 44198268
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  44198321 agagattctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 44198268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 20793857 - 20793810
Alignment:
Q  134 tctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  20793857 tctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 20793810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 48513409 - 48513587
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48513409 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48513508  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  48513509 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 48513587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 236 - 412
Target Start/End: Original strand, 3718203 - 3718383
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    ||||||||||||| || |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  3718203 tgaagcagtaactgtggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggt 3718302  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||| |||||||||||||    
T  3718303 gcagagcaatgaatcttgttcttcccattcggtgtaagcaggattcttcgttccagcttcgcgtgctgcatctgtgagata 3718383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 42105457 - 42105277
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  42105457 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggt 42105358  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||  ||||| |||||||||||| |||||||||||||    
T  42105357 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctcggttccagcttcgcgcgctgcatctgtgagata 42105277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 236 - 412
Target Start/End: Original strand, 48727851 - 48728031
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48727851 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48727950  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||| |||||| |||| ||||||| ||| |||||||||    
T  48727951 gcagagcaatgaatcttgttcttcccatttagtgtaagcaggattctccgttccagctttgcgcgctgcatgtgtgagata 48728031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 42105650 - 42105588
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105650 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 42105588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 48513216 - 48513278
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513216 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 48513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 3718010 - 3718072
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3718010 atagggtcaaactcttctggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 3718072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 48727658 - 48727720
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48727658 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggaccctgtgagagact 48727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 42105569 - 42105516
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  42105569 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 42105516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 48513297 - 48513350
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48513297 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 48513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 48727739 - 48727792
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  48727739 agagactctgaaattgcgcgaattcgagcaatgaattcaacgacagtgcgtgaa 48727792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 3718091 - 3718144
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  3718091 agagactctgaaattgcgtgaattcgagcaatgaattcaacgacagtgcgtgaa 3718144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
Q  312 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 364  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  34529808 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 34529860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
Q  312 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 364  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  45574882 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 45574934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
Q  312 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc 361  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||    
T  17990492 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc 17990443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Complemental strand, 29652086 - 29651908
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  29652086 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 29651987  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  29651986 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 29651908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 29652279 - 29652218
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652279 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 29652218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 29652198 - 29652145
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29652198 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 29652145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 36678940 - 36679118
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  36678940 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 36679039  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  36679040 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 36679118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 236 - 410
Target Start/End: Complemental strand, 36662838 - 36662660
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||    
T  36662838 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggt 36662739  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  36662738 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 36662660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 43560465 - 43560279
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  43560465 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 43560366  T
Q  332 gcagagcaaagaatcttgt------tcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||      |||||| |||||||||||||||| |||| ||||||||||||| | ||| |||||||||||||    
T  43560365 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagata 43560279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 389
Target Start/End: Original strand, 23203822 - 23203945
Alignment:
Q  266 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 365  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23203822 ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg 23203921  T
Q  366 taagcaggtttcttcgttcctgct 389  Q
    ||| |||| |||| ||||||||||    
T  23203922 taaacaggattctccgttcctgct 23203945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 36663031 - 36662969
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36663031 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 36662969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 36678747 - 36678808
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678747 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 36678808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 23198492 - 23198552
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagaga 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23198492 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctatgagaga 23198552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 36662950 - 36662897
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  36662950 agagattctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 36662897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 36678828 - 36678881
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  36678828 agagactctgaaattgcgcgaattcgagcaatgaattcagagacagtgcgtgaa 36678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43560577 - 43560524
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  43560577 agagactctgaaattgcgagaattcgagcaatgaattcagcgacagtgcgtgaa 43560524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 23198573 - 23198626
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||| || |||||||||||||| |||||||||| ||||||||    
T  23198573 agagactctgaaattgtgcaaattcgagcaatgaattcagcgacagtgcgtgaa 23198626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 23198685 - 23198716
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc 267  Q
    ||||||||||||||||||||||||||||||||    
T  23198685 tgaagcagtaactatgaatctcatcccaaacc 23198716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 38327668 - 38327846
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  38327668 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 38327767  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgaga 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  38327768 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgaga 38327846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 46073662 - 46073482
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaa----ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    |||||||||||||||| |||||||||||||    ||| ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  46073662 tgaagcagtaactatggatctcatcccaaatctgccatgagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 46073563  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||    
T  46073562 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagata 46073482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 55488956 - 55488776
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaa----accacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    ||||||||||||| || ||||||||||||     |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  55488956 tgaagcagtaactgtggatctcatcccaagcctgccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggt 55488857  T
Q  332 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||| |||||||||||||    
T  55488856 gcagagcaatgaatcttgttcttcccattcagtgtaagcagaattctccgttccagcttcgcgtgctgcatctgtgagata 55488776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 46073855 - 46073793
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073855 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 46073793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 38327475 - 38327536
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327475 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 38327536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 55489149 - 55489087
Alignment:
Q  72 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 134  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55489149 atagggtcaaactcttcaagaagtgcttcaagaacaacttcaattaggtccctgtgagagact 55489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 38327556 - 38327609
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  38327556 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 38327609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 46073774 - 46073721
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  46073774 agagactctgaatttgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 46073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 55489068 - 55489015
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  55489068 agagactcagaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 55489015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
Q  312 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 364  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  35029014 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 35029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 409 - 223
Alignment:
Q  236 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 331  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  409 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 310  T
Q  332 gcagagcaaagaatcttgt------tcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagata 412  Q
    ||||||||| |||||||||      |||||| |||||||||||||||| |||| ||||||||||||| | ||| |||||||||||||    
T  309 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagata 223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 521 - 468
Alignment:
Q  128 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 181  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  521 agagactctgaaattgcgagaattcgagcaatgaattcagcgacagtgcgtgaa 468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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