View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_high_10 (Length: 366)
Name: NF20810_high_10
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_high_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 49923293 - 49922935
Alignment:
| Q |
9 |
cagagagaacaacaccaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaa-tcccacgagtaaaacaacctgacccagat |
107 |
Q |
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| T |
49923293 |
cagagagaacaacaccaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaaatcccacgagtaaaacaacctgacccagat |
49923194 |
T |
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| Q |
108 |
tcgtaaaatgcaaaaagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaccagagttccatg |
207 |
Q |
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| T |
49923193 |
tcgtaaaatgcaaaaagaaatgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaacagagttccatg |
49923094 |
T |
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| Q |
208 |
atggacttagagctggaatgagaaaatctagatccatgtgtgaaactatgtagttttcagtgagtataagatagtgtgactttgatttgatttaatatca |
307 |
Q |
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| T |
49923093 |
atggacttagaacgggaatgagaaaatccagatccatgtgtgaaactatgcagttttcagtgagtataagatagtgtgactttgatttgatttaacatca |
49922994 |
T |
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| Q |
308 |
ggttgagaatgctatgctatgttgcatagagtgacaagaacttgggtaacagtgagtgt |
366 |
Q |
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| T |
49922993 |
ggttgagaatgctatgctatgttgcatagagtgacaagaacttaggtaacagtgagtgt |
49922935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 26777782 - 26778128
Alignment:
| Q |
9 |
cagagagaacaacaccaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaatcccacgagtaaaacaacctgacccagatt |
108 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||| |||||||||||||||| |
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| T |
26777782 |
cagagagaacaacaccaggaacaagctttccagggagaatggatccaacaatggctaagtaagtaaaaaaacccgcaagtaaagcaacctgacccagatt |
26777881 |
T |
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| Q |
109 |
cgtaaaatgcaaaaagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaccagagttccatga |
208 |
Q |
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|| |||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |||| | ||||||||||| |
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| T |
26777882 |
cgaaaaatgcaaaaagatatgaaattgatgacagaattggaataaatgattgaattaaagtaatgggttgtgagtagtttgaactaacggagttccatga |
26777981 |
T |
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| Q |
209 |
tggacttagagctggaatgagaaaatctagatccatgtgtgaaactatgtagttttcagtgagtataagatagtgtgactttgatttgatttaatatc-a |
307 |
Q |
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|||| ||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||||| | |
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| T |
26777982 |
tggaattagagcgtgaatgagaaaatccagatccatgtgtgacactatgcagttttcagtgagtataagatagtgtgac-----ttcgatttaatatcaa |
26778076 |
T |
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| Q |
308 |
ggttgagaatgctatgctatgttgcatagagtgacaagaacttgggtaacagtgagtgt |
366 |
Q |
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| T |
26778077 |
ggttgagaatgc-------tgttgcagagagtgacaatgacttgggtaacagtgagtgt |
26778128 |
T |
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