View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_high_2 (Length: 767)
Name: NF20810_high_2
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_high_2 |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 13 - 748
Target Start/End: Complemental strand, 40645518 - 40644784
Alignment:
| Q |
13 |
aatatctagaagaaggnnnnnnnttgaatccacatctctttatagttccacaaaagaccatcaaagcctccattatcaagattaccaaagaaattgtcca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40645518 |
aatatctagaagaaggaaaaaaattgaatccacatctctttatagttccacaaaagaccatcaaagcctccattatcaagattaccaaagaaattgtcca |
40645419 |
T |
|
| Q |
113 |
cattaactttaatacaaccttcggaagataccagcaatcatgaagaatcacatcttgcttgttagtagaaccaagagcgcatcatggagaaatgatacga |
212 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40645418 |
cattaactttaata-aaccttcgaaagataccagcaatcatgaagaatcacatgttgcttgttagtagaaccaagagcgcatcatggagaaatgatacga |
40645320 |
T |
|
| Q |
213 |
gaatatgttatcgattgaaatccaaatatcttttttcacatgttaaaaaatatcaacatttttgttctgccaaatatcaaaacatcttactatgaacata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40645319 |
gaatatgttatcgattgaaatccaaatatcttttttcacatgttgaaaaatatcaacatttttgttccgccaaatatcaaaacatcttactatgaacatc |
40645220 |
T |
|
| Q |
313 |
taaaccacatctggcaaccctccatgctaaagttgttaggaagctgcacnnnnnnnncttctagatagccattatgttgggacaatcccgatgacatgca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
40645219 |
taaaccacatctggcaaccctccatgctaaagttgttaggaagctgcacaaaaaaaacttctagatagccattatgttgggacaatcccgatgacataca |
40645120 |
T |
|
| Q |
413 |
atatttgtgatgagatgtcacaaacctcttaagacactagttggaatactaccatccatcaccaactaacaacaatgtctaaggttttcaatgattcgca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40645119 |
atatttgtgatgagatgtcacaaacctcttaagacactagttggaatactaccatccatcacaaactaacaacaatgtctaaggttttcaatgattcgca |
40645020 |
T |
|
| Q |
513 |
gccgcgaaatccaactccaacaagttgttggtgctaattgttgaattgaaccttgatccaaccatctatatccatgattgttcgagtttatcattaggag |
612 |
Q |
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| T |
40645019 |
gccgcgaaatccaactccaacaagttgttggtgccaattgttgaattgaatcttgatccaaccatctatatccatgattgttcgagtttatcattaggag |
40644920 |
T |
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| Q |
613 |
aatcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaatacagtcatggtaaagtatactagaaatctaaattaactcttctag |
712 |
Q |
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| T |
40644919 |
agtcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaatacagtcatggtaaagtatactagaaatctaaattaactcttctag |
40644820 |
T |
|
| Q |
713 |
acaacataggaaatttgaggtatttacctagctgag |
748 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
40644819 |
acaacataggaaatttgaggtacttacctagctgag |
40644784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 667
Target Start/End: Original strand, 37665553 - 37665603
Alignment:
| Q |
617 |
actccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaat |
667 |
Q |
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|||||||||||||||||| | |||||||||| ||||||||||||| |||| |
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| T |
37665553 |
actccaaatgagtttatccttaatgtcatgaacaatggtaatgctacgaat |
37665603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 840924 - 840859
Alignment:
| Q |
616 |
cactccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaatacagtcatggtaaa |
681 |
Q |
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| T |
840924 |
cactccaaatgagtttatcatcaacgtcactatcaatggtaatgctacgaatacagtcttggtaaa |
840859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 662
Target Start/End: Original strand, 7726114 - 7726172
Alignment:
| Q |
604 |
cattaggagaatcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgcta |
662 |
Q |
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||||||| ||| ||||||||||||||||||||| | ||||||||| ||| || |||||| |
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| T |
7726114 |
cattaggtgaaccactccaaatgagtttatcattagtgtcatgattaatagtgatgcta |
7726172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 662
Target Start/End: Original strand, 14901 - 14959
Alignment:
| Q |
604 |
cattaggagaatcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgcta |
662 |
Q |
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|||| |||||| ||||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
14901 |
catttggagaagcactccaaatgagtttatcctcggtgtcatgatcaatggtaatgcta |
14959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 667
Target Start/End: Original strand, 1260217 - 1260280
Alignment:
| Q |
604 |
cattaggagaatcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaat |
667 |
Q |
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|||| |||||| |||| |||||||||||||| || ||||||||| ||||||||||||| |||| |
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| T |
1260217 |
catttggagaagcacttcaaatgagtttatcttcggtgtcatgatcaatggtaatgctacgaat |
1260280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 670
Target Start/End: Complemental strand, 429703 - 429638
Alignment:
| Q |
605 |
attaggagaatcactccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaataca |
670 |
Q |
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|||||| ||| ||||||||||||||||||||||||| | || || |||||||| ||| ||||||| |
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| T |
429703 |
attaggggaagcactccaaatgagtttatcatcaatttaattgtggatggtaatactacgaataca |
429638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 430157 - 430048
Alignment:
| Q |
203 |
aatgatacgagaatatgttatcgattgaaatccaaatatcttttttcacatgttaaaaaatatcaacatttttgttctgccaaatatcaaaacatcttac |
302 |
Q |
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|||||||||||||||| |||| | |||| | || | ||||| ||||||| || |||||| ||| |||| | ||| ||||||| ||||||||| |||| |
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| T |
430157 |
aatgatacgagaatatattattcactgaagccaaagtgtctttcttcacatcttgaaaaatctcattatttctattccgccaaatctcaaaacatgttac |
430058 |
T |
|
| Q |
303 |
tatgaacata |
312 |
Q |
| |
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|||||||||| |
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| T |
430057 |
tatgaacata |
430048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 46652611 - 46652551
Alignment:
| Q |
528 |
tccaacaagttgttggtgctaattgttgaattgaaccttgatccaaccatctatatccatga |
589 |
Q |
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|||||||||| |||||||| |||| | || ||||| |||||||||||||| ||||||||||| |
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| T |
46652611 |
tccaacaagtagttggtgcaaattat-gagttgaatcttgatccaaccatttatatccatga |
46652551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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