View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_high_7 (Length: 447)
Name: NF20810_high_7
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 27801032 - 27801460
Alignment:
| Q |
18 |
cctaagatttcatatgctgacctttatcaggtgattatttaccttcactcacttgttatgtaaatctgcaataaatccaataattttgtgttcaagtggt |
117 |
Q |
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| T |
27801032 |
cctaagatttcatatgctgacctttatcaggtgattatttaccttcactcacttgttatgtaaatctgcaataaatccaataattttgtgttcaagtggt |
27801131 |
T |
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| Q |
118 |
tttcttagaaattgtagaatggggtcaatgactttcaattttgtctccagtgtgcaacatgattttttgattagataaatttatttatgttatgtctatt |
217 |
Q |
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| T |
27801132 |
tttcttagaaattgtagaatggggtcaatgactttcaattttgtctccagtgtgcaacatgattttttgattagataaatttatttatgttatgtctatt |
27801231 |
T |
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| Q |
218 |
gcggagctcctatttctgctacttc-------caacttaaattgtcctctttatacattgtttgtgactctggacagtcaaaactctgggattgctgctt |
310 |
Q |
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| T |
27801232 |
gtggcgctcctatttctgctacttccaattttcaacttaaattgtcctctttatacattgtttgtgactctggacagtcaaaactctgggattgctgctt |
27801331 |
T |
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| Q |
311 |
tgtttagttttttcatgcagtgttaggtggtattagtttacccagttcttgtttctattttgaaactgaatcttattgttaggtggattgtatgaatctt |
410 |
Q |
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| T |
27801332 |
tgtttagttttttcatgcagtgttaggtggtattagtttacccagttcttgtttctattttgaaactgaatctcattgttaggtggattgtatgaatctt |
27801431 |
T |
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| Q |
411 |
gaagttacatacataacatgccctttgct |
439 |
Q |
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| T |
27801432 |
gaagttacatacataacatgccctttgct |
27801460 |
T |
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