View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_high_9 (Length: 410)
Name: NF20810_high_9
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 52 - 287
Target Start/End: Original strand, 37534911 - 37535143
Alignment:
| Q |
52 |
actaagaggtattttgccaattatttttgcttgtcacggaaataatcaattaattaagtttaaatccgaagcatatccttttcaattggaaatatatatc |
151 |
Q |
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| T |
37534911 |
actaagacgtattttgccaattatttttgcttgtcacggaaataatcaatt----aagtttaaatccgaagcatatccttttcaattggaaatatatatc |
37535006 |
T |
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| Q |
152 |
cgtaatcggaaaaatcgtatgcctcgttnnnnnnnntcggaaaagtcgtttatctcctt-aaaaagatatgtaacaaaatagcctataaatatgagaaat |
250 |
Q |
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| T |
37535007 |
cgtaatcggaaaaatcgtatgcctcgttaaaaaaaatatgaaaaatcgtatatctcgttaaaaaaaatatgtaacaaaatagcctataaataagataagt |
37535106 |
T |
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| Q |
251 |
acaattgaaaagtttaagctcacaattctctaattag |
287 |
Q |
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| T |
37535107 |
acgattgaaaagtttaagctcacaattctctaattag |
37535143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 37537259 - 37537336
Alignment:
| Q |
90 |
gaaataatcaatt-aattaagtttaaatccgaagcatatccttttcaattggaaatatatatccgtaatcggaaaaat |
166 |
Q |
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| T |
37537259 |
gaaataatcaaatcaattaattttaaatccgaaccatattcttttcaattggaaatatatttccgtattcggaaaaat |
37537336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 37535169 - 37535210
Alignment:
| Q |
308 |
aaattagggttagcgatttcacacctttcggctttcaccaat |
349 |
Q |
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| T |
37535169 |
aaattagggttagcgatttcacacctttcggctttcaccaat |
37535210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 37526063 - 37526025
Alignment:
| Q |
311 |
ttagggttagcgatttcacacctttcggctttcaccaat |
349 |
Q |
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| T |
37526063 |
ttagggttagcgatttcacacctttcgacgttcaccaat |
37526025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 37540298 - 37540332
Alignment:
| Q |
308 |
aaattagggttagcgatttcacacctttcggcttt |
342 |
Q |
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| T |
37540298 |
aaattagggttagcgatttctcacctttcggcttt |
37540332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 37540211 - 37540288
Alignment:
| Q |
211 |
aaaaagatatgtaacaaaatagcctataaatatga-gaaatacaattgaaaagtttaagctcac-aattctctaatta |
286 |
Q |
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||||| ||||||||| ||||| |||||||||| | ||| ||| |||||||||| ||||||||| ||||||||||||| |
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| T |
37540211 |
aaaaaaatatgtaaccaaataacctataaataaaaagaagtacgattgaaaagtctaagctcacaaattctctaatta |
37540288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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