View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_low_12 (Length: 237)
Name: NF20810_low_12
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 44140742 - 44140540
Alignment:
| Q |
19 |
tatcggtctgattccatatgtgggatccattccaaaagtcgacacatgaattcagtccagtgatatattgttgaaaagggcatgttagaaagtattatca |
118 |
Q |
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| T |
44140742 |
tatcggtctgattccatatgtgggatccattccaaaagtcgacacatgaattcagtccagtaatatattgttgaaaagggcatgttagaaagtattatga |
44140643 |
T |
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| Q |
119 |
ctaacatttttcttaacatgaatgcacttcaagattatatattataaagaattaggaaagaaaataacaagttaacaactttaagtggaacaatggtaaa |
218 |
Q |
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| T |
44140642 |
ctaacatttttcttaacatgaatgcacttcaagattatatattataaagaattagaaaagaaaataacaagttaacaactttaagtggaacaatggtaaa |
44140543 |
T |
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| Q |
219 |
aag |
221 |
Q |
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||| |
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| T |
44140542 |
aag |
44140540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 40889349 - 40889310
Alignment:
| Q |
182 |
ataacaagttaacaactttaagtggaacaatggtaaaaag |
221 |
Q |
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| T |
40889349 |
ataacaagttaacaactttaagtggaacaatggtaaaaag |
40889310 |
T |
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