View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20810_low_5 (Length: 504)
Name: NF20810_low_5
Description: NF20810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20810_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 35277757 - 35277322
Alignment:
| Q |
1 |
cataatttcgaccacatttaaaagaaaaggaaaattatgttgtatcaaactccgaaacaatctaatcaaaccttcatgtatataaatagtgaaatatatt |
100 |
Q |
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| T |
35277757 |
cataatttcgaccacattaaaaagaaaaggaaaattatgttgtatcaaactccgaaacaatctagtcaaaccttcatgtatataaatagtgaaatatatt |
35277658 |
T |
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| Q |
101 |
tgaattcaat-------------catttaaaataacccaatgataaaatctactgtttgcaaaaataatgtttatagaccaaacttgattgctataacta |
187 |
Q |
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| T |
35277657 |
tgaattcaatttacaaattcaatcatttaaaataacccaatgataaaatctactgtttgcaaaaataatgtttatagaccaaacttgattgctataacta |
35277558 |
T |
|
| Q |
188 |
tagaaacaaaaacaaataaaaacatggattagatttaccttattgtcctttgtgtcaaacctctttgcttttttctccatttctaaccccaaagttgtct |
287 |
Q |
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| T |
35277557 |
tagaaacaaagacaaataaaaacatggtttagatttaccttattgtcctttgtgtcaaacctctttgcttttttctccatttctaaccccaaagttgtct |
35277458 |
T |
|
| Q |
288 |
tcaccaaatctagtttatgagacatgttctgttttatctttgcttgtttcttttcccttatgcccttcataacctctg-aacacaacaaacatttcaaag |
386 |
Q |
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| T |
35277457 |
tcaccaaatcaggtttatgagacatgttctgttttatctttgcttgtttcttttcccttatgcccttcataacctctgaaactcaacaaacatttcaaaa |
35277358 |
T |
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| Q |
387 |
agtc------aaatttggaatgaaatcataaaaata |
416 |
Q |
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| T |
35277357 |
ggtcaatgcaaaatttggaatgaaatcataaaaata |
35277322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 35277293 - 35277242
Alignment:
| Q |
453 |
ctaccttgagttgtgatgagtctataaacatggccaagaagaagagtatcat |
504 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
35277293 |
ctaccttgagttgtgatgagtctataaacatgaccaagaattagagtatcat |
35277242 |
T |
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