View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20811_low_1 (Length: 375)
Name: NF20811_low_1
Description: NF20811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20811_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 453847 - 453574
Alignment:
| Q |
1 |
ttctgtctggtgtggttctctctgtagcgagtgcttatgaaaaacaatcacaaagcggaaaggatgaagagcttatggaatatcacaacaaagaatatgg |
100 |
Q |
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| T |
453847 |
ttctgtctggtgtggttctctctgtagggagtgcttatgaaaaaccatcaccaagcggaaaggatgaagagcttatggaatatcacaagaaagaatatgg |
453748 |
T |
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| Q |
101 |
taactttatttatattttctctatttttgtgtttagttttaatggtattgatagatgtcgtgaatgatagttatataagtcaatcgtgcaatattatgca |
200 |
Q |
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| T |
453747 |
taactttatttttattttctctatttctgtgtttagttctaacggtattgatagatgtcatgaatgatagttatttaagtcaattgtgcaatattatgca |
453648 |
T |
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| Q |
201 |
gttataagtggaaggaaattgattttggagccacttaatggtggaaaagataacgtaaagggaggtggcgacta |
274 |
Q |
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| T |
453647 |
gttataagtggaaggaaattgattttggagccacttaatggtggaaaagataaggtaaagggaggtggcgacta |
453574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 441350 - 441263
Alignment:
| Q |
160 |
gtgaatgatagttatataagtcaatcgtgcaatattatgcagttataagtggaaggaaattgattttggagccacttaatggtggaaa |
247 |
Q |
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| T |
441350 |
gtgaatgatggttatttaagttaattgtgaaatattatgcagttttaagtggaaggaaaatgaccttagagccacttcatggtggaaa |
441263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 441502 - 441393
Alignment:
| Q |
1 |
ttctgtctggtgtggttctc---tctgtagcgagtgcttatgaaaaacaatcacaaagcggaaaggatgaagagcttatggaatatcacaacaaagaata |
97 |
Q |
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| T |
441502 |
ttctgtctggtgtggttctcatatctgcagtgacggcttatgaagatccaccaccaagcagaaaggatgaagagcttatggagtgtgacaagcaagaata |
441403 |
T |
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| Q |
98 |
tggtaacttt |
107 |
Q |
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| T |
441402 |
tggtaacttt |
441393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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