View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20812_high_10 (Length: 251)

Name: NF20812_high_10
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20812_high_10
NF20812_high_10
[»] chr8 (4 HSPs)
chr8 (33-155)||(26798885-26799007)
chr8 (25-149)||(27518518-27518641)
chr8 (151-238)||(26799061-26799148)
chr8 (16-87)||(15065268-15065341)
[»] chr5 (2 HSPs)
chr5 (1-155)||(23010721-23010874)
chr5 (96-128)||(11983623-11983655)
[»] chr7 (1 HSPs)
chr7 (10-122)||(15028788-15028898)
[»] chr3 (1 HSPs)
chr3 (45-148)||(38363574-38363677)
[»] chr4 (1 HSPs)
chr4 (11-43)||(6087851-6087883)
[»] chr2 (1 HSPs)
chr2 (166-206)||(28581450-28581490)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 26798885 - 26799007
Alignment:
Q  33 tattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaagagaaaattt 132  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798885 tattaattgttgttatctttttattgttttggtgaatatgccctcataaaaagttagtgatagattaaatgcatccactaatattaaaaagagaaaattt 26798984  T
Q  133 aaagtgagggtaaaaaggtccta 155  Q
    |||||||||||||||||||||||    
T  26798985 aaagtgagggtaaaaaggtccta 26799007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 27518641 - 27518518
Alignment:
Q  25 aatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaaga 124  Q
    ||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  27518641 aatgaggttattaattgctgttatttttttattgttttagtaaatatgccctcataaaaagtt-gtgatatattaaatgcatccactaatattaaaaaga 27518543  T
Q  125 gaaaatttaaagtgagggtaaaaag 149  Q
     |||| ||||| ||| |||||||||    
T  27518542 caaaaattaaaatgaaggtaaaaag 27518518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 26799061 - 26799148
Alignment:
Q  151 tcctaggggtaaattggaaatgacctattatacagggaaaaaatactattaacccttttgataatataattgacattctctttgctct 238  Q
    |||||||||||||   ||||||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  26799061 tcctaggggtaaaccagaaatgacctattatatcggggaaaaaaactattaactcttttgataatataattgacattctctttgctct 26799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 15065268 - 15065341
Alignment:
Q  16 atcaaaaccaatgaagttattaattgttgttatctttt--tattgttttggtaaatatgccctcacaaaaagtt 87  Q
    |||||||||||||||||||||| ||||| || | ||||  ||||||||||| ||||||||||| | ||||||||    
T  15065268 atcaaaaccaatgaagttattagttgttattttttttttttattgttttggcaaatatgccctgataaaaagtt 15065341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 23010874 - 23010721
Alignment:
Q  1 aagaaaacaaaaaacatcaaaaccaatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaa 100  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| || | | ||||||||    
T  23010874 aagaaaacaaaaaacataaaaaccaatgaggttattaatagttgttatctttttattgttttggcaaatatgtcctcataaaaa-tttgcgttagattaa 23010776  T
Q  101 atgcatccactaatattaaaaagagaaaatttaaagtgagggtaaaaaggtccta 155  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  23010775 atgcatccactaatattaaaaagacaaaatttaaagtgagggtaaaaaagtccta 23010721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 11983623 - 11983655
Alignment:
Q  96 attaaatgcatccactaatattaaaaagagaaa 128  Q
    ||||||| |||||||||||||||||||||||||    
T  11983623 attaaatacatccactaatattaaaaagagaaa 11983655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 15028898 - 15028788
Alignment:
Q  10 aaaaacatcaaaaccaatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatcca 109  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||    |||||| ||||||  |||| || |||||| |||||||| |||||    
T  15028898 aaaaacatcaaaacaaatgatgttatta-ttgttgttatctttttattatttgaccaaatataccctcatgaaaaatt-gtgatacattaaatgtatcca 15028801  T
Q  110 ctaatattaaaaa 122  Q
    |||||||||||||    
T  15028800 ctaatattaaaaa 15028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 38363677 - 38363574
Alignment:
Q  45 ttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaa-gagaaaatttaaagtgagggt 143  Q
    |||||||  ||||||||||  ||||||| | ||| |||||||| |||| ||||| ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  38363677 ttatcttcatattgttttgacaaatatgtcttcataaaaagtt-gtgacagatttaatgcttccactaatattaaaaaagagaaaatttaaggtgagggt 38363579  T
Q  144 aaaaa 148  Q
    |||||    
T  38363578 aaaaa 38363574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 6087851 - 6087883
Alignment:
Q  11 aaaacatcaaaaccaatgaagttattaattgtt 43  Q
    |||||||||||||||||||||||||| ||||||    
T  6087851 aaaacatcaaaaccaatgaagttatttattgtt 6087883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 28581490 - 28581450
Alignment:
Q  166 ggaaatgacctattatacagggaaaaaatactattaaccct 206  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  28581490 ggaaatgacctattttacagggaaaaagcactattaaccct 28581450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University