View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_high_14 (Length: 239)
Name: NF20812_high_14
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 32557924 - 32558069
Alignment:
| Q |
1 |
cattacggcaagggcctcggaccaaaataggcttattttaatgatatcaatatcatgtaaagtacaaaacatcaataaggttaaaaatatatggctactg |
100 |
Q |
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| T |
32557924 |
cattacggcaagggcctcggaccaaaataggcttattttaatgatatcaatatcatgtaaagtacaaaacatcaataaggttaaaaatatatggctactg |
32558023 |
T |
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| Q |
101 |
agaaaaaacgagaaaatttaaagtttcagattaagtttcagattaa |
146 |
Q |
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| T |
32558024 |
agaaaaaacgagaaaatttaaagtttcagattaagtttcagattaa |
32558069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 32558051 - 32558116
Alignment:
| Q |
153 |
agattaagtttcagatcaattcgaagacaaaaataggatttcagatgtttagaaaaccttggacgc |
218 |
Q |
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| T |
32558051 |
agattaagtttcagattaattcgaagacaaaaataggatttcagatgtttagaaaaccttggacgc |
32558116 |
T |
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