View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_high_4 (Length: 367)
Name: NF20812_high_4
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 31612957 - 31613146
Alignment:
| Q |
17 |
ttacaaatttaatttaatgttatcaaag------catgtctcgtcaagacattgacggtctaaattttatgatttgaattattgatatnnnnnnnntaga |
110 |
Q |
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| T |
31612957 |
ttacaaatttgatttaaggttatcaaaggtttggcatgtctcgttaagacattgacggtctagattttataatttgaattattgatataaaaaaaataaa |
31613056 |
T |
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| Q |
111 |
tcaaattttacattgataattaaaccgtctaatcttgatcgcacatgtcaaacgcagttaactacatataatcgg-ccacaaattattaa |
199 |
Q |
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| T |
31613057 |
tcgaagtttacattgataattaaaccatctgatcttgatcgcaaatgtcaaatgcaggtaactacatataatcggcccacaaattattaa |
31613146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 31613329 - 31613379
Alignment:
| Q |
191 |
aattattaaatatgaagctctcttcctaactaaataaagccaagcgaagct |
241 |
Q |
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| T |
31613329 |
aattattaaatatgaagctctcttcctaactaaataaagccaagcgaagct |
31613379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 31613439 - 31613490
Alignment:
| Q |
301 |
gtataccaaaccaaacccatcctgtataaactttacaagaaaataccaaact |
352 |
Q |
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| T |
31613439 |
gtataccaaaccaaacccatcctgtataaactttacaagaaaaaaccaaact |
31613490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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