View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20812_low_1 (Length: 873)

Name: NF20812_low_1
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20812_low_1
NF20812_low_1
[»] chr3 (18 HSPs)
chr3 (17-771)||(11614969-11615728)
chr3 (27-306)||(11605545-11605824)
chr3 (23-306)||(13766164-13766447)
chr3 (479-723)||(13752267-13752511)
chr3 (479-723)||(13765670-13765914)
chr3 (23-306)||(13752761-13753044)
chr3 (505-727)||(11606079-11606302)
chr3 (769-871)||(11614812-11614914)
chr3 (479-727)||(13738832-13739074)
chr3 (27-187)||(14331576-14331736)
chr3 (27-187)||(14335536-14335696)
chr3 (27-137)||(14331413-14331523)
chr3 (27-137)||(14335373-14335483)
chr3 (53-192)||(13739417-13739556)
chr3 (395-469)||(13739111-13739185)
chr3 (395-468)||(11605931-11606004)
chr3 (395-448)||(13752581-13752634)
chr3 (395-448)||(13765984-13766037)
[»] chr6 (3 HSPs)
chr6 (23-306)||(35079199-35079482)
chr6 (479-719)||(35079773-35080010)
chr6 (353-470)||(35079606-35079725)
[»] chr2 (3 HSPs)
chr2 (27-148)||(8714961-8715082)
chr2 (29-137)||(8714820-8714931)
chr2 (34-117)||(8671994-8672077)


Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 17 - 771
Target Start/End: Complemental strand, 11615728 - 11614969
Alignment:
Q  17 agttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615728 agttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaat 11615629  T
Q  117 ccttttgtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgaca 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615628 ccttttgtttgtgaaaaagctcgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgaca 11615529  T
Q  217 aggcagacattccacaaactccacatggatggcagcgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtatnnnnnnnnnn 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  11615528 aggcagacattccacaaactccacatggatggcaacgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtataaaaaaaaac 11615429  T
Q  317 ntatgtagc----aataccactattatggattttgtctatgaatttctaatttgtttttcatcgttttatcactcttgcgaatttt-gatatttcagata 411  Q
     ||||||||    ||||||||| ||||| |||||| ||||||||||||||||||||  ||||| ||||||||||||||||| |||| |||||||||||||    
T  11615428 atatgtagctagcaataccacttttatgaattttggctatgaatttctaatttgttcatcatcattttatcactcttgcgattttttgatatttcagata 11615329  T
Q  412 ctatatagcaccatcaagcaagaaattgcgctcaatggtcgaggtcaagaggtatgttcaaatctatcttgtcttaattgaactatcgtccttatcatta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615328 ctatatagcaccatcaagcaagaaattgcgctcaatggtcgaggtcaagaggtatgttcaaatctatcttgtcttaattgaactatcgtccttatcatta 11615229  T
Q  512 ttaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtgtaactcc 611  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615228 ttaaaaattggctttcatctttcttatatttttctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtgtaactcc 11615129  T
Q  612 tgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaaggtacataa 711  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615128 tgcacggttctcatttgaagtgcctacgccattgcaagaaaactacatgaggaagaagcgctctcatgctaaatctgttgaacctaagcaaggtacataa 11615029  T
Q  712 aattttaattaaatcaaccttacacgttatatgattttagtttgatgcaccaatgtattt 771  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615028 aattttaattaaatcaaccttacacgttatatgattttagtttgatgcaccaatgtattt 11614969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 27 - 306
Target Start/End: Original strand, 11605545 - 11605824
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||||||||||||||  ||| |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||| ||| ||||||| |||||||| |||    
T  11605545 ttcactgttcaatgtaattcctgttataaatggaggttgattccaacaaagaaaaaatatgaagaaatacgggaacataaccttcaacatccttttattt 11605644  T
Q  127 gtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgacaaggcagacat 226  Q
    ||| ||||||| |||||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||| |||| ||||||||||||||| |||| ||    
T  11605645 gtgtaaaagctcgtgagtggcgacccgatatatcttgtgatgatccagaggatgtttctcaggataacaatatgatttgggctattgacaagccagaaat 11605744  T
Q  227 tccacaaactccacatggatggcagcgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtat 306  Q
    ||||||  ||||  |||||||||||||||||||||||||||||  ||||||||| ||| |||||| ||||||||| ||||    
T  11605745 tccacaggctcccgatggatggcagcgactgctacgaatcagaggtgaaggaagcagccaatttggagatatgtatgtat 11605824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 13766447 - 13766164
Alignment:
Q  23 tgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatcctttt 122  Q
    ||||||| |||||||||||  ||  |||| ||||||||||||   ||| ||  || ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  13766447 tgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaacataaccttcaacatcctttt 13766348  T
Q  123 gtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgacaaggcag 222  Q
    ||||||||||| ||| | |||||||||||  || | |||||| ||| ||| |||||||||||||||||| ||| | |||| ||||||||||||||| |||    
T  13766347 gtttgtgaaaatgctcgggagtggcgacctgatatttcttgtgatgatccagaggatgtttctcaggatgacagtatgatttgggctattgacaagccag 13766248  T
Q  223 acattccacaaactccacatggatggcagcgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtat 306  Q
      |||||||| |||||| ||||||||||||||||||||| ||| |||  ||||||||| ||| |||||| ||||||||||||||    
T  13766247 gaattccacagactccagatggatggcagcgactgctacaaattagaggtgaaggaagcagccaatttggagatatgtaagtat 13766164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 479 - 723
Target Start/End: Complemental strand, 13752511 - 13752267
Alignment:
Q  479 cttgtcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgta 578  Q
    |||||||||||||||  || ||| |  |||||||||||  ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||| | |    
T  13752511 cttgtcttaattgaatcattgtcatcttcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaa 13752412  T
Q  579 tcatccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcat 678  Q
    |||| ||||||||| || | ||||||| ||| ||||||||||||| ||| || |||||| | | |||||||| |||||   || ||||||||||||||||    
T  13752411 tcattcagagtacacgacagatggtgttacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactatgtgaagaagaagcgctctcat 13752312  T
Q  679 gctaaatctgttgaacctaagcaaggtacataaaattttaattaa 723  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  13752311 gctaaatctgttgaacctaatcaaggtacgtaaaattttaattaa 13752267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 479 - 723
Target Start/End: Complemental strand, 13765914 - 13765670
Alignment:
Q  479 cttgtcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgta 578  Q
    |||||||||||||||| || ||| |  |||||||||||  ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||| | |    
T  13765914 cttgtcttaattgaaccattgtcatcttcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaa 13765815  T
Q  579 tcatccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcat 678  Q
    |||| ||||||||| || | ||||||| ||| ||||||||||||| ||| ||  ||||| | | |||||||| |||||   || ||||||||||||||||    
T  13765814 tcattcagagtacacgacagatggtgttacttctgcacggttctcatttcaaaagcctaagcccttgcaagagaactatgtgaagaagaagcgctctcat 13765715  T
Q  679 gctaaatctgttgaacctaagcaaggtacataaaattttaattaa 723  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  13765714 gctaaatctgttgaacctaaccaaggtacgtaaaattttaattaa 13765670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 13753044 - 13752761
Alignment:
Q  23 tgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatcctttt 122  Q
    ||||||| |||||||||||  ||  |||| ||||||||||||   ||| ||  || ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  13753044 tgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaacataaccttcaacatcctttt 13752945  T
Q  123 gtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgacaaggcag 222  Q
    ||||||||||| ||| | |||||||||||  || | |||||| ||| ||| |||||||||||||||||| ||| | |||| ||||||||||||||| |||    
T  13752944 gtttgtgaaaatgctcgggagtggcgacctgatatttcttgtgatgatccagaggatgtttctcaggatgacagtatgatttgggctattgacaagccag 13752845  T
Q  223 acattccacaaactccacatggatggcagcgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtat 306  Q
      |||||||| |||||| ||||||||||||||||||||| ||| |||  ||||||||| ||| |||||| ||||||||| ||||    
T  13752844 gaattccacagactccagatggatggcagcgactgctacaaattagaggtgaaggaagcagccaatttggagatatgtatgtat 13752761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 505 - 727
Target Start/End: Original strand, 11606079 - 11606302
Alignment:
Q  505 atcattattaaaaattggctttca-tctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggt 603  Q
    ||||||||||||||| | |||||| ||||||||| |||| | ||||  ||||||| ||| ||||||||| ||  ||||||||||||||  || |||||||    
T  11606079 atcattattaaaaatcgcctttcaatctttcttacatttcgttcccggtgcttgtgtttgaaggttctttgccgatcatccagagtacgtgacaaatggt 11606178  T
Q  604 gtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaag 703  Q
    |||||| ||||||||||||| ||| || |||||| | | |||||||| ||||||  || ||||||||| |||||||||||||||||||||||||||||||    
T  11606179 gtaacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactacgtgaagaagaagcgttctcatgctaaatctgttgaacctaagcaag 11606278  T
Q  704 gtacataaaattttaattaaatca 727  Q
    ||||||||| |||||| |||||||    
T  11606279 gtacataaatttttaactaaatca 11606302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 769 - 871
Target Start/End: Complemental strand, 11614914 - 11614812
Alignment:
Q  769 tttttcacccttacacgttcccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt 868  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614914 tttttcacccttacacgtttccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt 11614815  T
Q  869 aca 871  Q
    |||    
T  11614814 aca 11614812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 479 - 727
Target Start/End: Complemental strand, 13739074 - 13738832
Alignment:
Q  479 cttgtcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgta 578  Q
    |||| ||||||||||  || ||| | ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||  |    
T  13739074 cttggcttaattgaatcattgtcatcatcattattaaaatttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggcaga 13738975  T
Q  579 tcatccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcat 678  Q
    |||||||||||| | || | |||||||||||| | | |||||||| ||| ||   |||| |||   |||||||| |||   |||   |||||||||||||    
T  13738974 tcatccagagtatatgacagatggtgtaactctttcgcggttctcatttaaaagacctaagtc---gcaagaaagctatgtgag---gaagcgctctcat 13738881  T
Q  679 gctaaatctgttgaacctaagcaaggtacataaaattttaattaaatca 727  Q
    |||||||| ||||||| ||||||||||||||  |||||||| |||||||    
T  13738880 gctaaatcggttgaacataagcaaggtacattcaattttaactaaatca 13738832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 14331736 - 14331576
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||| ||||||||||  ||| |||| ||||| ||||||  |||| |||||| |||||||||||||||||| |||| | ||  |||||||| |||||||||    
T  14331736 ttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgttt 14331637  T
Q  127 gtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctca 187  Q
    || ||||| |||| |||||||||| | || |||||||| ||| ||  ||||||||||||||    
T  14331636 gttaaaaatcttgggagtggcgacacgatatatcttgtgatggtcaagaggatgtttctca 14331576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 14335696 - 14335536
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||| ||||||||||  ||| |||| ||||| ||||||  |||| |||||| |||||||||||||||||| |||| | ||  |||||||| |||||||||    
T  14335696 ttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgttt 14335597  T
Q  127 gtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctca 187  Q
    || ||||| |||| |||||||||| | || |||||||| ||| ||  ||||||||||||||    
T  14335596 gttaaaaatcttgggagtggcgacacgatatatcttgtgatggtcaagaggatgtttctca 14335536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 14331413 - 14331523
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||| ||||||||||| ||  |||  ||||||||||||  |||   ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14331413 ttcagtgttcaatgtgatttctgtactaaatggaggttcattctagcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgttt 14331512  T
Q  127 gtgaaaaagct 137  Q
    |||| ||||||    
T  14331513 gtgataaagct 14331523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 14335373 - 14335483
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||| ||||||||||| ||  |||  ||||||||||||  |||   ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14335373 ttcagtgttcaatgtgatttctgtactaaatggaggttcattctagcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgttt 14335472  T
Q  127 gtgaaaaagct 137  Q
    |||| ||||||    
T  14335473 gtgataaagct 14335483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 13739556 - 13739417
Alignment:
Q  53 taaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccc 152  Q
    ||||||||||||  |||| ||||||||||||||||||||||||| |||||||||   ||| |||  |||| |||||||||| | |||||||||||||||     
T  13739556 taaatggaggttaattccaacaaaggaaaaatatgaagaaatacttgaatatatgggtcagaatttttttttttgtgaaaatgtttgtgagtggcgacct 13739457  T
Q  153 tatctatcttgtaatgttccggaggatgtttctcaggata 192  Q
      | |||||||| ||| | | |||||| |||||| |||||    
T  13739456 ggtgtatcttgtgatgatacagaggatatttctccggata 13739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 13739185 - 13739111
Alignment:
Q  395 ttttgatatttcagatactatatagcaccatcaagcaagaaattgcgctcaatggtcgaggtcaagaggtatgtt 469  Q
    |||| ||||||||||||||||  |||||||||| ||||||||||||||||||||  ||||||||||| |||||||    
T  13739185 ttttaatatttcagatactatgaagcaccatcaggcaagaaattgcgctcaatgcccgaggtcaagaagtatgtt 13739111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 11605931 - 11606004
Alignment:
Q  395 ttttgatatttcagatactatatagcaccatcaagcaagaaattgcgctcaatggtcgaggtcaagaggtatgt 468  Q
    |||| |||||| |||||||||| |||||||||| ||||||||||||||||||||  ||||||| ||| ||||||    
T  11605931 tttttatattttagatactataaagcaccatcaggcaagaaattgcgctcaatgcccgaggtcgagaagtatgt 11606004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 13752634 - 13752581
Alignment:
Q  395 ttttgatatttcagatactatatagcaccatcaagcaagaaattgcgctcaatg 448  Q
    |||| ||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  13752634 ttttaatatttcagatactatgaagcaccatcaggcaagaaattgcgctcaatg 13752581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 13766037 - 13765984
Alignment:
Q  395 ttttgatatttcagatactatatagcaccatcaagcaagaaattgcgctcaatg 448  Q
    |||| ||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  13766037 ttttaatatttcagatactatgaagcaccatcaggcaagaaattgcgctcaatg 13765984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 35079199 - 35079482
Alignment:
Q  23 tgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatcctttt 122  Q
    ||||||||||||||||||||||   |||| ||||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||| | || |||    
T  35079199 tgctttcactgttcaatgtgctaactgttttaaatggaggttgattccaaccaaggaaaaatatgaagaaattcgtgaatatatccttcaagaacccttt 35079298  T
Q  123 gtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaatttgatctgggctattgacaaggcag 222  Q
    || ||||| |||||| |||||||||||||  || |||| ||| ||| ||| |||||| | |||||||||  || |  ||| ||||||||||| ||| ||     
T  35079299 gtctgtgacaaagctcgtgagtggcgacctgatgtatcctgtgatgatccagaggatatctctcaggatggcagtaggatttgggctattgataagccaa 35079398  T
Q  223 acattccacaaactccacatggatggcagcgactgctacgaatcagatctgaaggaagtagcaaatttgcagatatgtaagtat 306  Q
     |||| ||||| ||||| |||||||||||||||||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  35079399 gcattgcacaacctccagatggatggcagcgactgctacgaatcagaggtgaaggaagcagcaaattcgcagacatgtatgtat 35079482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 479 - 719
Target Start/End: Original strand, 35079773 - 35080010
Alignment:
Q  479 cttgtcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgta 578  Q
    ||||||||||||||| ||| ||  | |||||||||||  || | ||||||||||||||| ||||||||||   ||||||| ||||||| ||||||||| |    
T  35079773 cttgtcttaattgaattattgttatcatcattattaatcatcgtctttcatctttcttacattttgctcctggtgcttgtgttttaagattcttggcgga 35079872  T
Q  579 tcatccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcat 678  Q
     ||||| ||||||| || |  |||||||||||||||||||||||| ||  || | |||| | ||||||||||||||||   |||   |||||||||||||    
T  35079873 acatcctgagtacatgacagctggtgtaactcctgcacggttctcattccaaattcctaagccattgcaagaaaactatgtgag---gaagcgctctcat 35079969  T
Q  679 gctaaatctgttgaacctaagcaaggtacataaaattttaa 719  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  35079970 gctaaatctattgaacctgagcaaggtacataacattttaa 35080010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 470
Target Start/End: Original strand, 35079606 - 35079725
Alignment:
Q  353 gaatttctaatttgtttttcatcgttttatcactcttgcgaattttg--atatttcagatactatatagcaccatcaagcaagaaattgcgctcaatggt 450  Q
    |||||| |||||||||| ||||| |||| ||||| ||  || ||||   ||||||||||||||||  |||||||||  | |||||| |||||||||||||    
T  35079606 gaatttataatttgtttatcatcattttgtcactgttctgatttttttaatatttcagatactatgaagcaccatccggaaagaaactgcgctcaatggt 35079705  T
Q  451 cgaggtcaagaggtatgttc 470  Q
    ||||||| | | ||||||||    
T  35079706 cgaggtccacaagtatgttc 35079725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 8715082 - 8714961
Alignment:
Q  27 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 126  Q
    |||||||||||||||| ||| |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  8715082 ttcactgttcaatgtgattcgtgttctaaatggaggttgattccaacaaagaaaaaatatgaataaatacgtgaacatatccttcaaaatccttttgttt 8714983  T
Q  127 gtgaaaaagcttgtgagtggcg 148  Q
    |||| |||||| | ||||||||    
T  8714982 gtgataaagctcgggagtggcg 8714961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 8714820 - 8714931
Alignment:
Q  29 cactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatata---tccttcaaaatccttttgtt 125  Q
    |||||||||||||| ||| |||| ||||||||||||  |||| |||||| ||||||||||||||||| ||||| |||   ||||||| |||| |||||||    
T  8714820 cactgttcaatgtgattcctgttctaaatggaggttaattccaacaaagaaaaaatatgaagaaatatgtgaacatatcctccttcacaatcattttgtt 8714919  T
Q  126 tgtgaaaaagct 137  Q
    ||||| ||||||    
T  8714920 tgtgataaagct 8714931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 8671994 - 8672077
Alignment:
Q  34 ttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatc 117  Q
    ||||||||| ||| |||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||| ||||    
T  8671994 ttcaatgtgattcctgttctaaatggaggttgattccaacaaagaaaaaatatgaagaaatatgtgaacatatccttcacaatc 8672077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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