View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20812_low_10 (Length: 280)

Name: NF20812_low_10
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20812_low_10
NF20812_low_10
[»] chr1 (4 HSPs)
chr1 (164-267)||(35583265-35583368)
chr1 (16-87)||(35583626-35583697)
chr1 (203-251)||(1815306-1815354)
chr1 (203-250)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (203-267)||(16766757-16766821)
[»] chr5 (1 HSPs)
chr5 (203-250)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (203-250)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (203-250)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (203-236)||(7197274-7197307)
chr7 (206-250)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (203-251)||(8847-8895)
[»] chr4 (2 HSPs)
chr4 (203-267)||(30982813-30982877)
chr4 (203-251)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 35583368 - 35583265
Alignment:
Q  164 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  35583368 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacgcctaatctatagaatgtctg 35583269  T
Q  264 tgct 267  Q
    ||||    
T  35583268 tgct 35583265  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 35583697 - 35583626
Alignment:
Q  16 cagaaacaggctgaagtcacaccccaactcaacgcagttgcccaccaccgccacaaacaaactccgtccagg 87  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35583697 cagaaacaggctgaagtcgcaccccaactcaacgcagttgcccacctccgccacaaacaaactccgtccagg 35583626  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 251  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 250  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 16766757 - 16766821
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 267  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||   |||||||| |||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgct 16766821  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 250  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 250  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 250  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccg 236  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  206 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 250  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 251  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 30982877 - 30982813
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 267  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||| | ||| |||| |||||    
T  30982877 tgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgct 30982813  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  203 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 251  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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