View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_low_14 (Length: 248)
Name: NF20812_low_14
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 30433176 - 30432953
Alignment:
| Q |
10 |
aagaaaatataaggacaaactatacta---tttactatatttgtcttttgcaataacaattaaatataagtcttttagttcctcaaagaatcaaaataac |
106 |
Q |
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| T |
30433176 |
aagaaaatataaggacaaactatactactatttgctatatttgtcttttgcaataacagttaaatataagtcttttagttcctcaaagaatcaaaataac |
30433077 |
T |
|
| Q |
107 |
tataggggcaaaatataaagtatcttcatgggagtctaagtagtcctacacctactatatgagtccacacattttgattccaatatggtgtgaattaata |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
30433076 |
tataggggcaaaatataaagtatgttcatgggagtctaagtagtcctacacctactatatgaatccacacattttaattccaatatggtgtgaattaata |
30432977 |
T |
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| Q |
207 |
gttggtggtttcaattaactatag |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
30432976 |
gttggtggtttcaattaactatag |
30432953 |
T |
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