View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_low_2 (Length: 487)
Name: NF20812_low_2
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 152 - 471
Target Start/End: Original strand, 36238938 - 36239257
Alignment:
| Q |
152 |
gaataatatgaaggtgggggtgtaagtggaggaatagaggtttcagataaagggtgcttaggagtaccaggttgtgcctcccatacaaagggaattgcaa |
251 |
Q |
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| T |
36238938 |
gaataatatgaaggtgggggtgtaagtggaggaatagaggtttcagataaagggtgcttaggagtaccaggttgtgcctcccatacaaagggaattgcaa |
36239037 |
T |
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| Q |
252 |
ttgatgtttctccataatacatgacccttgatgaagtgttggcactagaagcttcctttgattttagccttaagaagaatttatcatcttgctttattct |
351 |
Q |
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| T |
36239038 |
ctgatctttctccataatacatgacccttgatgaagcgttggcactagaagcttcctttgattttagccttaagaagaatttatcatcttgctttattct |
36239137 |
T |
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| Q |
352 |
gaaagacttgtcaattgagagatgattgataccatcattgatcattttttgggtttagaaatattgtatcttgttttgaactatgatataaaataagcct |
451 |
Q |
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| T |
36239138 |
gaaagacttgtcaattgagagatgattgataccatcattgatcattttttgggtttagaaatattgtatcttgttttgaactatgatataaaataagcct |
36239237 |
T |
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| Q |
452 |
caaaggaaaatggaactata |
471 |
Q |
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| T |
36239238 |
caaaggaaaatggaactata |
36239257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 36238800 - 36238894
Alignment:
| Q |
14 |
gaagatgaagccgatgatgacgacccagacgatgtcgatgatgcatgagtagtcttccttgaacctaccaaccttgacaaaatgcatgaaaaaat |
108 |
Q |
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| T |
36238800 |
gaagatgaagccgatgatgacgacccagacgatgtcgatgatgcatgagtagtcttccttgaacctaccaaccttaacaaaatgcatgaaaaaat |
36238894 |
T |
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