View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20812_low_3 (Length: 439)

Name: NF20812_low_3
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20812_low_3
NF20812_low_3
[»] chr4 (43 HSPs)
chr4 (8-421)||(19500636-19501049)
chr4 (161-270)||(30982808-30982917)
chr4 (160-277)||(5414101-5414218)
chr4 (210-316)||(51701234-51701338)
chr4 (160-231)||(23292926-23292997)
chr4 (159-272)||(22234818-22234931)
chr4 (159-270)||(24613629-24613740)
chr4 (159-197)||(3064867-3064905)
chr4 (172-270)||(30522857-30522954)
chr4 (160-270)||(36635344-36635449)
chr4 (159-272)||(19482686-19482799)
chr4 (159-196)||(20633554-20633591)
chr4 (165-258)||(30838242-30838335)
chr4 (160-269)||(46083920-46084029)
chr4 (160-296)||(715545-715672)
chr4 (160-296)||(752871-752998)
chr4 (159-195)||(5775303-5775339)
chr4 (210-270)||(13134470-13134530)
chr4 (159-231)||(16073442-16073514)
chr4 (164-272)||(27706110-27706218)
chr4 (160-231)||(2361915-2361986)
chr4 (160-231)||(28964188-28964259)
chr4 (160-231)||(34306744-34306815)
chr4 (161-195)||(4383450-4383484)
chr4 (162-272)||(19312353-19312463)
chr4 (215-277)||(44132628-44132690)
chr4 (162-231)||(4157197-4157266)
chr4 (162-231)||(4157484-4157553)
chr4 (162-195)||(22440559-22440592)
chr4 (159-200)||(40784032-40784073)
chr4 (159-200)||(53381529-53381570)
chr4 (159-195)||(2625958-2625994)
chr4 (162-194)||(7424742-7424774)
chr4 (160-196)||(7970583-7970619)
chr4 (159-195)||(11596296-11596332)
chr4 (159-195)||(17876250-17876286)
chr4 (159-195)||(18513174-18513210)
chr4 (160-192)||(18966596-18966628)
chr4 (159-231)||(23861368-23861440)
chr4 (163-195)||(28084608-28084640)
chr4 (159-195)||(30299013-30299049)
chr4 (159-195)||(30327881-30327917)
chr4 (182-222)||(40006060-40006100)
[»] chr1 (45 HSPs)
chr1 (160-272)||(47989515-47989627)
chr1 (160-272)||(32461393-32461504)
chr1 (159-255)||(25934651-25934747)
chr1 (159-270)||(9828064-9828175)
chr1 (160-231)||(22515827-22515898)
chr1 (160-272)||(5944301-5944413)
chr1 (152-272)||(31694631-31694751)
chr1 (209-270)||(44482250-44482311)
chr1 (159-231)||(51410073-51410145)
chr1 (160-270)||(36906017-36906126)
chr1 (159-237)||(40917802-40917880)
chr1 (159-200)||(21365991-21366032)
chr1 (160-200)||(1704935-1704975)
chr1 (160-271)||(15449170-15449272)
chr1 (211-270)||(25361906-25361965)
chr1 (160-231)||(46348323-46348394)
chr1 (159-277)||(34315725-34315843)
chr1 (157-195)||(37598915-37598953)
chr1 (161-195)||(48415667-48415701)
chr1 (165-270)||(9629834-9629939)
chr1 (174-283)||(48147980-48148089)
chr1 (210-270)||(12713306-12713366)
chr1 (210-270)||(12717397-12717457)
chr1 (160-272)||(18556385-18556497)
chr1 (161-237)||(21032259-21032335)
chr1 (159-195)||(22947814-22947850)
chr1 (210-270)||(34371733-34371793)
chr1 (160-195)||(6574061-6574096)
chr1 (156-195)||(34741930-34741969)
chr1 (160-195)||(35702542-35702577)
chr1 (160-195)||(36878550-36878585)
chr1 (160-247)||(41597410-41597497)
chr1 (161-195)||(10572535-10572569)
chr1 (161-195)||(10577676-10577710)
chr1 (159-193)||(24334663-24334697)
chr1 (162-200)||(42359391-42359429)
chr1 (159-236)||(6427518-6427595)
chr1 (162-195)||(16297223-16297256)
chr1 (159-200)||(22881566-22881607)
chr1 (160-205)||(27965940-27965985)
chr1 (241-314)||(40181848-40181920)
chr1 (159-231)||(1815305-1815377)
chr1 (159-195)||(7918153-7918189)
chr1 (159-195)||(15765842-15765878)
chr1 (160-200)||(16812635-16812675)
[»] scaffold0136 (1 HSPs)
scaffold0136 (157-291)||(3775-3908)
[»] chr6 (38 HSPs)
chr6 (159-277)||(18367849-18367967)
chr6 (160-291)||(8713979-8714110)
chr6 (160-277)||(16488519-16488636)
chr6 (159-270)||(10339053-10339165)
chr6 (160-272)||(16766715-16766827)
chr6 (159-270)||(17327589-17327694)
chr6 (163-231)||(32978842-32978910)
chr6 (160-291)||(5970037-5970167)
chr6 (160-231)||(34595182-34595253)
chr6 (160-237)||(3209441-3209518)
chr6 (160-269)||(7248379-7248488)
chr6 (159-272)||(8365447-8365560)
chr6 (209-270)||(26562709-26562770)
chr6 (159-231)||(4877991-4878062)
chr6 (159-195)||(10649372-10649408)
chr6 (161-200)||(31385009-31385048)
chr6 (160-237)||(34446612-34446690)
chr6 (159-200)||(8776907-8776948)
chr6 (160-201)||(10842611-10842652)
chr6 (211-272)||(11424691-11424752)
chr6 (231-291)||(5732510-5732569)
chr6 (160-200)||(7938179-7938219)
chr6 (227-315)||(9025490-9025577)
chr6 (180-272)||(9522909-9523001)
chr6 (161-197)||(17841530-17841566)
chr6 (159-231)||(33001228-33001300)
chr6 (229-272)||(7151430-7151473)
chr6 (211-270)||(9195734-9195793)
chr6 (160-231)||(28152146-28152217)
chr6 (160-194)||(7723199-7723233)
chr6 (211-268)||(10294129-10294186)
chr6 (160-197)||(13360313-13360350)
chr6 (222-283)||(34868777-34868838)
chr6 (159-195)||(426477-426513)
chr6 (163-195)||(7996325-7996357)
chr6 (163-195)||(8022444-8022476)
chr6 (159-195)||(8805523-8805559)
chr6 (226-270)||(10888969-10889013)
[»] scaffold0623 (1 HSPs)
scaffold0623 (161-277)||(5926-6042)
[»] chr8 (32 HSPs)
chr8 (160-272)||(15816058-15816170)
chr8 (161-254)||(24205749-24205842)
chr8 (160-296)||(11803254-11803389)
chr8 (160-236)||(34450961-34451037)
chr8 (160-291)||(11927015-11927145)
chr8 (160-267)||(29447467-29447574)
chr8 (160-277)||(18964190-18964309)
chr8 (160-272)||(22651994-22652106)
chr8 (160-291)||(11944665-11944795)
chr8 (160-270)||(26902104-26902214)
chr8 (159-200)||(13397630-13397671)
chr8 (161-270)||(29447040-29447149)
chr8 (159-272)||(29510232-29510345)
chr8 (160-235)||(28745553-28745628)
chr8 (160-231)||(33405324-33405395)
chr8 (210-272)||(2572035-2572097)
chr8 (159-200)||(13403185-13403226)
chr8 (160-200)||(13436910-13436950)
chr8 (160-231)||(3951476-3951547)
chr8 (159-194)||(4673353-4673388)
chr8 (160-195)||(9383050-9383085)
chr8 (160-195)||(31514938-31514973)
chr8 (160-195)||(34127172-34127207)
chr8 (161-195)||(13009423-13009457)
chr8 (161-231)||(43737752-43737822)
chr8 (162-231)||(3025599-3025668)
chr8 (160-233)||(6065586-6065659)
chr8 (213-270)||(25172680-25172737)
chr8 (229-270)||(39954277-39954318)
chr8 (159-231)||(5813640-5813712)
chr8 (160-200)||(17751735-17751775)
chr8 (160-200)||(17760722-17760762)
[»] chr2 (25 HSPs)
chr2 (160-277)||(34784911-34785028)
chr2 (160-255)||(35056903-35056998)
chr2 (159-272)||(37419761-37419874)
chr2 (160-278)||(11223793-11223910)
chr2 (162-231)||(2438661-2438730)
chr2 (212-277)||(18054784-18054849)
chr2 (160-277)||(36096304-36096421)
chr2 (160-272)||(30717459-30717571)
chr2 (160-231)||(24009343-24009414)
chr2 (162-269)||(36756275-36756382)
chr2 (210-276)||(2665869-2665933)
chr2 (160-231)||(18840953-18841024)
chr2 (161-195)||(18255945-18255979)
chr2 (160-254)||(26769547-26769641)
chr2 (160-200)||(44635572-44635612)
chr2 (159-198)||(20539631-20539670)
chr2 (209-255)||(19614218-19614264)
chr2 (160-250)||(42511322-42511411)
chr2 (240-277)||(20922937-20922974)
chr2 (162-195)||(42832234-42832267)
chr2 (159-195)||(19536360-19536396)
chr2 (162-206)||(19942338-19942382)
chr2 (159-195)||(21616829-21616865)
chr2 (159-195)||(34993921-34993957)
chr2 (160-200)||(38117099-38117139)
[»] chr7 (36 HSPs)
chr7 (160-272)||(24339660-24339772)
chr7 (160-272)||(2334268-2334379)
chr7 (159-291)||(7438706-7438837)
chr7 (161-270)||(32308140-32308249)
chr7 (214-270)||(8160436-8160492)
chr7 (162-272)||(26033392-26033502)
chr7 (159-200)||(9778584-9778625)
chr7 (209-270)||(15902842-15902903)
chr7 (159-231)||(15680857-15680929)
chr7 (159-231)||(33994260-33994332)
chr7 (161-272)||(11665370-11665481)
chr7 (160-231)||(21880200-21880271)
chr7 (159-225)||(5409770-5409836)
chr7 (162-272)||(9408265-9408375)
chr7 (163-200)||(8842282-8842319)
chr7 (183-272)||(21560521-21560610)
chr7 (159-195)||(35862035-35862071)
chr7 (160-231)||(598256-598327)
chr7 (161-264)||(4794915-4795018)
chr7 (160-195)||(5307340-5307375)
chr7 (225-296)||(16341491-16341561)
chr7 (160-255)||(25822690-25822785)
chr7 (160-195)||(28155638-28155673)
chr7 (160-195)||(29763129-29763164)
chr7 (231-277)||(18213033-18213079)
chr7 (161-231)||(20549839-20549909)
chr7 (160-194)||(30813882-30813916)
chr7 (227-288)||(5233632-5233692)
chr7 (225-270)||(17307913-17307958)
chr7 (222-283)||(18039006-18039067)
chr7 (160-200)||(6490795-6490835)
chr7 (226-270)||(7328686-7328730)
chr7 (160-200)||(17852079-17852119)
chr7 (226-270)||(22602705-22602749)
chr7 (232-272)||(38143241-38143281)
chr7 (160-200)||(43027404-43027444)
[»] chr5 (38 HSPs)
chr5 (160-272)||(39698559-39698671)
chr5 (161-277)||(6401511-6401627)
chr5 (160-277)||(21814274-21814391)
chr5 (160-276)||(21522764-21522880)
chr5 (160-276)||(21533330-21533446)
chr5 (163-300)||(19452998-19453134)
chr5 (159-271)||(37328774-37328884)
chr5 (160-272)||(7677723-7677835)
chr5 (162-270)||(19579721-19579829)
chr5 (161-264)||(21542056-21542159)
chr5 (160-253)||(32766872-32766965)
chr5 (159-263)||(11685966-11686069)
chr5 (163-270)||(18592093-18592200)
chr5 (160-231)||(21576685-21576756)
chr5 (159-200)||(14873601-14873642)
chr5 (159-195)||(10298634-10298670)
chr5 (159-231)||(28588613-28588685)
chr5 (160-195)||(17123131-17123166)
chr5 (160-195)||(22423764-22423799)
chr5 (227-270)||(35017057-35017100)
chr5 (160-195)||(35017127-35017162)
chr5 (160-195)||(36838615-36838650)
chr5 (164-206)||(4105332-4105374)
chr5 (162-195)||(21190998-21191031)
chr5 (162-206)||(23321168-23321210)
chr5 (162-231)||(30502330-30502399)
chr5 (162-231)||(30542673-30542742)
chr5 (210-291)||(36642741-36642821)
chr5 (162-195)||(41995548-41995581)
chr5 (162-195)||(43001889-43001922)
chr5 (160-196)||(2436994-2437030)
chr5 (228-296)||(6471886-6471953)
chr5 (160-200)||(16304366-16304406)
chr5 (160-200)||(19820328-19820368)
chr5 (163-195)||(39268541-39268573)
chr5 (159-195)||(39695950-39695986)
chr5 (160-228)||(42029803-42029871)
chr5 (159-195)||(43564965-43565001)
[»] scaffold0003 (1 HSPs)
scaffold0003 (160-271)||(241613-241724)
[»] chr3 (35 HSPs)
chr3 (162-272)||(4987222-4987332)
chr3 (160-231)||(20503513-20503584)
chr3 (160-231)||(55401123-55401194)
chr3 (164-270)||(11665964-11666070)
chr3 (161-231)||(8789489-8789561)
chr3 (159-276)||(14209127-14209244)
chr3 (159-231)||(40993274-40993346)
chr3 (159-291)||(55212963-55213093)
chr3 (160-231)||(13845465-13845536)
chr3 (160-291)||(34185052-34185182)
chr3 (160-272)||(25064927-25065037)
chr3 (228-272)||(15314873-15314917)
chr3 (162-226)||(29508503-29508567)
chr3 (159-291)||(49651715-49651845)
chr3 (160-255)||(8039764-8039859)
chr3 (209-296)||(16192728-16192814)
chr3 (180-270)||(34307735-34307819)
chr3 (159-254)||(41961578-41961673)
chr3 (160-230)||(8842378-8842448)
chr3 (160-285)||(16789018-16789141)
chr3 (226-270)||(11313795-11313839)
chr3 (160-283)||(27505254-27505370)
chr3 (160-195)||(4990912-4990947)
chr3 (161-200)||(15999951-15999990)
chr3 (225-272)||(25948881-25948928)
chr3 (161-195)||(1389922-1389956)
chr3 (161-195)||(15864916-15864950)
chr3 (159-200)||(14979228-14979269)
chr3 (162-195)||(28918087-28918120)
chr3 (159-200)||(40052391-40052432)
chr3 (160-200)||(2408590-2408630)
chr3 (160-200)||(3163971-3164011)
chr3 (159-195)||(5407198-5407234)
chr3 (159-231)||(7171549-7171621)
chr3 (160-188)||(51206293-51206321)
[»] scaffold0036 (1 HSPs)
scaffold0036 (162-270)||(9678-9786)
[»] scaffold0008 (1 HSPs)
scaffold0008 (162-270)||(263303-263411)
[»] scaffold0306 (1 HSPs)
scaffold0306 (162-231)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (162-231)||(21804-21873)
[»] scaffold0053 (1 HSPs)
scaffold0053 (160-231)||(8846-8917)
[»] scaffold0044 (1 HSPs)
scaffold0044 (167-270)||(53200-53303)
[»] scaffold0380 (1 HSPs)
scaffold0380 (159-233)||(8647-8721)
[»] scaffold0361 (1 HSPs)
scaffold0361 (160-226)||(14580-14646)
[»] scaffold0019 (1 HSPs)
scaffold0019 (159-236)||(71779-71856)
[»] scaffold0004 (1 HSPs)
scaffold0004 (161-226)||(92875-92940)
[»] scaffold0793 (1 HSPs)
scaffold0793 (160-296)||(4821-4948)
[»] scaffold0475 (1 HSPs)
scaffold0475 (159-195)||(3392-3428)
[»] scaffold0171 (1 HSPs)
scaffold0171 (213-296)||(23505-23588)
[»] scaffold0083 (1 HSPs)
scaffold0083 (160-231)||(45470-45541)
[»] scaffold0027 (1 HSPs)
scaffold0027 (160-195)||(46741-46776)
[»] scaffold0652 (1 HSPs)
scaffold0652 (161-231)||(403-473)
[»] scaffold0168 (1 HSPs)
scaffold0168 (159-196)||(21242-21279)
[»] scaffold0279 (1 HSPs)
scaffold0279 (210-254)||(17859-17903)
[»] scaffold0123 (1 HSPs)
scaffold0123 (222-270)||(44516-44564)
[»] scaffold0057 (1 HSPs)
scaffold0057 (159-195)||(24120-24156)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 19500636 - 19501049
Alignment:
Q  8 tccaagaatattggtatgtagggggtcaggttcaaaccctaaatttctcgcttcttcaaacttatatcgtataagttcagtcactagattacttgacaag 107  Q
    |||| ||| |||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||| |||||| | |||    
T  19500636 tccatgaacattggtatgtattaggtcaggttcaaaccctaaatttctcgcttcctcaaacttatatcgtatgagttcagccattaggttacttaataag 19500735  T
Q  108 aagataagattatcgctttataatcaaacggtcgagatttatacctacaaccctatgaagcacggacactccttggattaggcgtgtctcggtatcagag 207  Q
    || ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19500736 aaaataagatcatcgctttatattcaaacggtcgagatttatacctacaacc-tatgaagcacggatactccttggattaggcgtgcctcggtatcagag 19500834  T
Q  208 gtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaa-aaattattaaccgtgtccgtgttcgtatccat 306  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||| |||||||||||| |||||||    
T  19500835 gcgtgtcgtgtccgacaccgacacgacaccatcacatataattacactaaaatatgtgttttttttttaaattattaactgtgtccgtgttcctatccat 19500934  T
Q  307 gcttcatagcctacaacatactatggacaagatctgtaacattgggaagtcaatattgaagtccattcaactttggtgttaaagacgggaaggacacatt 406  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19500935 gcttcatagcctacaacatactatggccaagatctgtaacattgggaagtcaatattgaagtccattcaactttggtgttaaagacgggaaggacacatt 19501034  T
Q  407 ttcggtaatagtgtt 421  Q
    |||||||||||||||    
T  19501035 ttcggtaatagtgtt 19501049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 30982808 - 30982917
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    |||||||||||||||||| |||||||||||||||| |||| || ||   |||||||||  |||||||||||||||||  ||| |||||||||||| ||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaat 30982907  T
Q  261 atgtgatttt 270  Q
    ||||||||||    
T  30982908 atgtgatttt 30982917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 5414101 - 5414218
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||||||||||| ||| ||||| | || |||||   ||||||||| |||||| |||||||||||   |||||||||||||||  |     
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcat 5414200  T
Q  260 tatgtgattttttaaaaa 277  Q
    | ||||||||| ||||||    
T  5414201 tttgtgattttctaaaaa 5414218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 51701338 - 51701234
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgttcgtatccatgct 309  Q
    ||||||||||||||||||||||||||| | ||| | |||||||||| || ||||| |||||||  ||||||||| | ||||||||| |||||||| || |    
T  51701338 gtgtcgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgtaatttttt-caaattattagctgtgtccgtg-tcgtatccgtgtt 51701241  T
Q  310 tcatagc 316  Q
    |||||||    
T  51701240 tcatagc 51701234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 23292926 - 23292997
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| |||||||||||||| |||| || ||   ||||||||| ||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 22234818 - 22234931
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||| ||||| || |||||||  |||||  ||| || ||   |||||||||  |||||||||||||||||  |||||| ||||||||| ||    
T  22234818 cctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaa 22234917  T
Q  259 atatgtgatttttt 272  Q
     |||||||||||||    
T  22234918 ttatgtgatttttt 22234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 24613629 - 24613740
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| ||||||| ||||||  ||| |||||   |||||||||  |||||||||| ||||||  ||| | || ||||| | ||    
T  24613629 cctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaa 24613728  T
Q  259 atatgtgatttt 270  Q
     |||||||||||    
T  24613729 ttatgtgatttt 24613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 3064867 - 3064905
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctc 197  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3064867 cctatgaagcacggacactcctcggattaggcgtgtctc 3064905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 30522857 - 30522954
Alignment:
Q  172 gacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||| ||||||||| ||||||||||| |||||  ||||||||||| ||| ||||  |||| ||| || ||||| ||||||| || |||||||||||    
T  30522857 gacactctttggattagacgtgtctcggtgtcagatatgtgtcgtgtttgacgccgatccgac-ccaacatatatagttacactgaattatgtgatttt 30522954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 36635449 - 36635344
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||| | |||||||||||||| |||| || || | |||||||||  |||||  |||||     | |||||||||||||||| ||     
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacg-----aacacatataattacactgaat 36635355  T
Q  260 tatgtgatttt 270  Q
    |||||||||||    
T  36635354 tatgtgatttt 36635344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 19482799 - 19482686
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||| |||||||| |||||||| ||||| | || || ||   ||||||||| | | ||||||||||||||| ||| | |||||||||  ||    
T  19482799 cctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaa 19482700  T
Q  259 atatgtgatttttt 272  Q
     |||||||| ||||    
T  19482699 ttatgtgatatttt 19482686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 20633591 - 20633554
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtct 196  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20633591 cctatgaagcacgaacactccttggattaggcgtgtct 20633554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 30838335 - 30838242
Alignment:
Q  165 aagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||| || |||||||||||| ||| || ||   |||||| || |||||| |||||||||||   || |||||||||||||||    
T  30838335 aagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaa 30838242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 46083920 - 46084029
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||| ||||||||||   || ||||||||| | |  |||||   ||||||||| ||| || |||||||||||  ||||||||||||||||| |     
T  46083920 ctatgaagcatggacactcctcttataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactagat 46084019  T
Q  260 tatgtgattt 269  Q
    ||||||||||    
T  46084020 tatgtgattt 46084029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 715545 - 715672
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| |||||||||||||| | || || ||  ||||||||||         ||| ||||||| ||| | |||||||||| ||     
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---------acaagacaccaacacttgtaattacactgaat 715635  T
Q  260 tatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    |||||||||||||  ||||||||| | ||||| ||||    
T  715636 tatgtgattttttttaaattattagctgtgtcggtgt 715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 752871 - 752998
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| |||||||||||||| | || || ||  ||||||||||         ||| ||||||| ||| | |||||||||| ||     
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---------acaagacaccaacacttgtaattacactgaat 752961  T
Q  260 tatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    |||||||||||||  ||||||||| | ||||| ||||    
T  752962 tatgtgattttttttaaattattagctgtgtcggtgt 752998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 5775303 - 5775339
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5775303 cctatgaagcacggacactcctcggattaggcgtgtc 5775339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 13134530 - 13134470
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||| |||||||||  |||||||||| |  ||||||||||||||||||| |||||||||||    
T  13134530 gtgttgtgttcgacgtcgacacgacatcgacacatataattacactaaattatgtgatttt 13134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 16073514 - 16073442
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||| |||||||||| |||||||||||||||  || || ||  ||| |||||| ||||||||||||    
T  16073514 cctatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacac 16073442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 27706110 - 27706218
Alignment:
Q  164 gaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatg 263  Q
    |||||||| ||| ||||  ||||||||||||| ||||||| ||   ||||||||| |||||   |||||||||   ||| | ||||||||||||| ||||    
T  27706110 gaagcacgtacattcctcagattaggcgtgtcccggtatcggatacgtgtcgtgtccgacattaacacgacactcacacttgtaattacactaaattatg 27706209  T
Q  264 tgatttttt 272  Q
    |||||||||    
T  27706210 tgatttttt 27706218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2361915 - 2361986
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||| |  ||||||| |||||||||| |||||   | ||||||| ||||||||||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacac 2361986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 28964188 - 28964259
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||| |||||||||| |||||||||||||| | || || ||  |||||||||| |||||| |||||    
T  28964188 ctatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacac 28964259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 34306744 - 34306815
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||| ||| ||||  |||||||||||||||||| || ||   ||||||||| ||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 34306815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 4383484 - 4383450
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||| ||||||||||||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtgtc 4383450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 19312463 - 19312353
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||| |||||||||| ||  |||||| ||||||||||| || ||   ||||||| | ||||| ||||||||||||   || |||||||||||| ||  |    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaatca 19312364  T
Q  262 tgtgatttttt 272  Q
    |||||||||||    
T  19312363 tgtgatttttt 19312353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 44132628 - 44132690
Alignment:
Q  215 gtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaa 277  Q
    |||||||||||| ||||||||||  |||||||||||| ||| || || |||||||| ||||||    
T  44132628 gtgttcgacaccaacacgacaccgacacatataattatactgaattacgtgattttctaaaaa 44132690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 4157266 - 4157197
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||| ||||||||| | |||||| || ||||||| || ||  |||||||||| ||||||||||||    
T  4157266 atgaagcacagacactcctcgaattaggtgtttctcggtgtcggacatgtgtcgtgtccgacaccgacac 4157197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 4157553 - 4157484
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||  ||||||||| | ||||||||| ||||||| || ||  |||||||||| ||||||||||||    
T  4157553 atgaagcatagacactcctcgaattaggcgtttctcggtgtcggacatgtgtcgtgtccgacaccgacac 4157484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 22440559 - 22440592
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtc 22440592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 40784073 - 40784032
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| |||||||| ||||| ||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtcccggt 40784032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 53381529 - 53381570
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| |||||||| ||||| ||||    
T  53381529 cctatgaagcacggacactcctcggattaggtgtgtcccggt 53381570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 2625958 - 2625994
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  2625958 cctatgaagcacggatactccttgaattaggcgtgtc 2625994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 7424774 - 7424742
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgt 194  Q
    |||||||| ||||||||||||||||||||||||    
T  7424774 atgaagcatggacactccttggattaggcgtgt 7424742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 7970619 - 7970583
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtct 196  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  7970619 ctatgaagcaaggacacttcttggattaggcgtgtct 7970583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 11596296 - 11596332
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||||  |||||||||||||    
T  11596296 cctatgaagcacggacactcctcagattaggcgtgtc 11596332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 17876286 - 17876250
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17876286 cctatgaagcacagacactccttggattaggtgtgtc 17876250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 18513174 - 18513210
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||||  |||||||||||||    
T  18513174 cctatgaagcacggacactcctcagattaggcgtgtc 18513210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 18966628 - 18966596
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgt 192  Q
    |||||||||||||||||||||| ||||||||||    
T  18966628 ctatgaagcacggacactccttagattaggcgt 18966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 23861368 - 23861440
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||| |||||| ||| ||||||||||||| |||  ||||  |||||||| |  |||||||||||    
T  23861368 cctatgaagcacgaacactctttgaattaggcgtgtcttggtgacagacatgtgtcgtatctgacaccgacac 23861440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 28084640 - 28084608
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||| ||||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtc 28084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 30299049 - 30299013
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  30299049 cctatgaagcacggacactcctcggattagacgtgtc 30299013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 30327917 - 30327881
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  30327917 cctatgaagcacggacactcctcggattagacgtgtc 30327881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 40006100 - 40006060
Alignment:
Q  182 ggattaggcgtgtctcggtatcagaggtgtgtcgtgttcga 222  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  40006100 ggattaggcgtgtctcggtatcggacatgtgtcgtgttcga 40006060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 47989627 - 47989515
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| |||||||||||||| || | |||||  |||||||||| ||||||||||||||||||  ||| | |||||||||| ||     
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 47989528  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  47989527 tatgtgatttttt 47989515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 32461393 - 32461504
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||| ||||||||||||||||| | || |||||   ||||||||| |||||||||||| |||||| ||| | |||||||| ||||     
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaat 32461491  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  32461492 tatgtgatttttt 32461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 25934747 - 25934651
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacact 255  Q
    ||||||||||||||||||||||||||| |||||| || | || |||||   ||||||||| |||||||||||||| |||  ||||||||||||||||    
T  25934747 cctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacact 25934651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 9828175 - 9828064
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| ||||||| |||||| |||| || ||   |||||||||  ||||| |||||||||||  |||||| ||||||||| ||    
T  9828175 cctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaa 9828076  T
Q  259 atatgtgatttt 270  Q
     |||||||||||    
T  9828075 ttatgtgatttt 9828064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 22515827 - 22515898
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||  |||||||||| ||||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacac 22515898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 5944413 - 5944301
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||| |||||||| ||||||||||| || |||| || ||  ||||| |||| || || ||||||||||||  ||| |||||||||||| ||     
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaat 5944314  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  5944313 tatgtgatttttt 5944301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 31694631 - 31694751
Alignment:
Q  152 ctacaaccctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataatta 251  Q
    |||| ||||||||||||||||||||||||  ||||||||||||  |||| ||  |  ||||| |||| ||||||||||||||||||  ||| | ||||||    
T  31694631 ctaccaccctatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaatta 31694730  T
Q  252 cactaaaatatgtgatttttt 272  Q
     ||| || |||||||||||||    
T  31694731 tactgaattatgtgatttttt 31694751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 44482311 - 44482250
Alignment:
Q  209 tgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||| || |||||||||||    
T  44482311 tgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgatttt 44482250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 51410145 - 51410073
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||| | |||||||||||||||||||||||||| || ||   ||||||||| ||||||||||||    
T  51410145 cctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacac 51410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 36906126 - 36906017
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||| ||| |||||| ||||| | || ||||| | | ||||||| |||||| ||||| || ||| ||||||||||||| || ||     
T  36906126 ctatgaagcacggacactc-ttgcattaggtgtgtcccagtgtcagacgcgggtcgtgtccgacactgacacaacgccaacacatataattactctgaat 36906028  T
Q  260 tatgtgatttt 270  Q
    |||||||||||    
T  36906027 tatgtgatttt 36906017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 40917880 - 40917802
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacacc 237  Q
    ||||||||||||||||| |||| |||||||||||||| |||| || ||   ||||||||| | ||||||||||||||||    
T  40917880 cctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacacc 40917802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 21365991 - 21366032
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21365991 cctatgaagcacggacactcctcggattaggcgtgtctcggt 21366032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1704935 - 1704975
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  1704935 ctatgaagcatggacactccttggattaggcgtgtctcggt 1704975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 15449170 - 15449272
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||         ||||| ||||||||| |||||||   ||| | |||||||||||||     
T  15449170 ctatgaagcacagacactccttggattaggcatgtctcggtgtca---------cgtgtccgacaccgatacgacacagacacttgtaattacactaaat 15449260  T
Q  260 tatgtgattttt 271  Q
    ||||||||||||    
T  15449261 tatgtgattttt 15449272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 25361965 - 25361906
Alignment:
Q  211 tgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||| |||||||||||||||||   |||||||||||||||| || |||||||||||    
T  25361965 tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgatttt 25361906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 46348323 - 46348394
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||| ||| |||| |||||||||||||| || ||   ||||||||| ||||||||||||    
T  46348323 ctatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 46348394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 34315843 - 34315725
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||| |||||| ||||||  ||| || ||||||   |||| |||  |||||||||||||||||||| |||| |||  |||||||||||||||  ||    
T  34315843 cctatgaaacacggagactcctcagataagacgtgtcaacgtattagacatgtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaa 34315744  T
Q  259 atatgtgattttttaaaaa 277  Q
     |||||  |||||||||||    
T  34315743 ttatgtagttttttaaaaa 34315725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 37598953 - 37598915
Alignment:
Q  157 accctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  37598953 accctatgaagcacggacactcctcggattaggcgtgtc 37598915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 48415667 - 48415701
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||||||||||||||    
T  48415667 tatgaagcacggacactccttggattaggcgtgtc 48415701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 9629834 - 9629939
Alignment:
Q  165 aagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgt 264  Q
    ||||||||||||| ||||||  || |||||| |||| || ||  |||||||||| ||||| ||||||||||||  ||| |||||| ||||| || ||| |    
T  9629834 aagcacggacacttcttggacgagacgtgtcccggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatat 9629933  T
Q  265 gatttt 270  Q
    ||||||    
T  9629934 gatttt 9629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 48147980 - 48148089
Alignment:
Q  174 cactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttttta 273  Q
    ||||| || ||||||||||||| |||| ||| |  |  ||||||||||| | | ||||||||||  || ||||||||||||| || ||| |||||||||     
T  48147980 cactctttagattaggcgtgtcccggtgtcatacatacgtcgtgttcgatatcaacacgacaccgacatatataattacactgaattatatgattttttt 48148079  T
Q  274 aaaattatta 283  Q
    ||||||||||    
T  48148080 aaaattatta 48148089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 12713306 - 12713366
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||| |||| |||||||||||  ||||||  |||||||||||||||||| |||||||||||    
T  12713306 gtgttgtgtacgacaccgacataacaccaatacatataattacactaaattatgtgatttt 12713366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 12717397 - 12717457
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||| |||| |||||||||||  ||||||  |||||||||||||||||| |||||||||||    
T  12717397 gtgttgtgtacgacaccgacataacaccaatacatataattacactaaattatgtgatttt 12717457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 18556385 - 18556497
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||| || |||||||||||||| | || || ||   |||||| ||  ||||||| ||||||||||  || | |||||||| ||||     
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaat 18556484  T
Q  260 tatgtgatttttt 272  Q
    |||||||| ||||    
T  18556485 tatgtgatatttt 18556497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 21032335 - 21032259
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacacc 237  Q
    |||||||||| ||||||||||||||||||||| ||||| | || ||    |||||||| ||||||| ||||||||||    
T  21032335 tatgaagcacagacactccttggattaggcgtctctcgatgtcggacacatgtcgtgtccgacacccacacgacacc 21032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 22947850 - 22947814
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22947850 cctatgaagcacggacactcctcggattaggcgtgtc 22947814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 34371793 - 34371733
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||| | ||||||| ||||||||||  |||||||||||||||| || |||||||||||    
T  34371793 gtgtcgtatccgacaccaacacgacaccgacacatataattacactgaattatgtgatttt 34371733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 6574096 - 6574061
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6574096 ctatgaagcacggtcactccttggattaggcgtgtc 6574061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 34741969 - 34741930
Alignment:
Q  156 aaccctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  34741969 aaccctatgaagcacggacactcttcggattaggcgtgtc 34741930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 35702542 - 35702577
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtgtc 35702577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 36878585 - 36878550
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36878585 ctatgaagcacggacactcctgggattaggcgtgtc 36878550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 41597410 - 41597497
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatata 247  Q
    ||||||||||| |||||||||||||| | |||| || | || |||||   ||||||||| |||||| ||||| |||||| ||||||||    
T  41597410 ctatgaagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacacggacacaacaccaacacatata 41597497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 10572535 - 10572569
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtc 10572569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 10577676 - 10577710
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||||||| |||||||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtc 10577710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 24334663 - 24334697
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtg 193  Q
    ||||||||||||||||||| |||||||||||||||    
T  24334663 cctatgaagcacggacactacttggattaggcgtg 24334697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 42359391 - 42359429
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggt 42359429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 6427595 - 6427518
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacac 236  Q
    |||||||||||||||||||| |  ||||||||||||| |||| || ||   ||||||||| |||| || |||||||||    
T  6427595 cctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacac 6427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 16297223 - 16297256
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtc 16297256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 22881566 - 22881607
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| ||||||| |||||| ||||    
T  22881566 cctatgaagcacggacactcctcggattagacgtgtcccggt 22881607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 27965940 - 27965985
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcag 205  Q
    |||||||||| |||||||||| |||||||||||||| |||| ||||    
T  27965940 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcag 27965985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 40181920 - 40181848
Alignment:
Q  241 acatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgttcgtatccatgcttcata 314  Q
    ||||||||||||||| || ||||||||||| |  ||||||||| | ||||| |||| ||||||| |||||||||    
T  40181920 acatataattacactgaattatgtgattttct-caaattattagcagtgtctgtgtccgtatccgtgcttcata 40181848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 1815377 - 1815305
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||| ||||| |||||||  ||||||||||||| |||| || ||  ||||||||||  |||||||||||    
T  1815377 cctatgaatcacggtcactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacac 1815305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 7918153 - 7918189
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| |||||||| |||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtc 7918189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 15765878 - 15765842
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||| | ||||||||||||||    
T  15765878 cctatgaagcacggacactcttcggattaggcgtgtc 15765842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 16812675 - 16812635
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  16812675 ctatgaagcacggacactcctcagattaggcgtgtcccggt 16812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 157 - 291
Target Start/End: Original strand, 3775 - 3908
Alignment:
Q  157 accctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacacta 256  Q
    ||||||||||||| |||||||||| ||||||||||||||||| | || ||  |||||||||| ||||||| |||||||||   ||| | ||||||||||     
T  3775 accctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactg 3874  T
Q  257 aaatatgtgattttttaaaaattattaaccgtgtc 291  Q
    || |||||||||||||  |||||||||||||||||    
T  3875 aattatgtgatttttt-taaattattaaccgtgtc 3908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 18367967 - 18367849
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||||||||||||||||| ||||||||| | || |||||  ||||||||||  |||||||||||||||||  ||||||||||||||||  |    
T  18367967 cctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgca 18367868  T
Q  259 atatgtgattttttaaaaa 277  Q
     | ||||||||| ||||||    
T  18367867 ttttgtgattttctaaaaa 18367849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 8714110 - 8713979
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||  ||||||||| ||||| |||||||| || | || ||  |||||||||| ||||||||||||||||||  ||  | |||||||||| ||     
T  8714110 ctatgaagcaaagacactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaat 8714011  T
Q  260 tatgtgattttttaaaaattattaaccgtgtc 291  Q
    |||||||||||||  ||||||||||| |||||    
T  8714010 tatgtgatttttttcaaattattaactgtgtc 8713979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 16488519 - 16488636
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||| ||| ||||||||| ||||||||| | ||  ||||   ||||||||| ||||||||||||||||||  ||||||||||||||||  |     
T  16488519 ctatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcat 16488618  T
Q  260 tatgtgattttttaaaaa 277  Q
    | ||||||||| ||||||    
T  16488619 tttgtgattttctaaaaa 16488636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 10339053 - 10339165
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataatt-acactaa 257  Q
    ||||||||||||||||||||||  ||||||||||||| | || || ||  |||||||||| ||||||||||||| |||   ||||||||||| ||||| |    
T  10339053 cctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactga 10339152  T
Q  258 aatatgtgatttt 270  Q
    | |||||||||||    
T  10339153 attatgtgatttt 10339165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 16766827 - 16766715
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||| || | |||||||||||||| |||| || ||   |||| |||| ||||||||||||||||||  ||| | |||||||||| ||     
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 16766728  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  16766727 tatgtgatttttt 16766715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 17327589 - 17327694
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| |||||||||||||| | || |||||   |||||||||      ||||||||||||   |||||||| ||||||||||    
T  17327589 cctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgt------ccgacacgacactgacacatatagttacactaaa 17327682  T
Q  259 atatgtgatttt 270  Q
     |||||||||||    
T  17327683 ttatgtgatttt 17327694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 32978842 - 32978910
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||||||| |||||| |||| || ||  |||||||||| ||||||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 32978910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 5970037 - 5970167
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||  | ||||||| ||||| |||||||| || | || ||  |||||||||| ||||||||||||||||||  ||  | |||||||||| ||     
T  5970037 ctatgaagcatagtcactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaat 5970136  T
Q  260 tatgtgattttttaaaaattattaaccgtgtc 291  Q
    |||||||||||||  ||||||||||| |||||    
T  5970137 tatgtgatttttt-caaattattaactgtgtc 5970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 34595253 - 34595182
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| |||||||| ||||| |||| |||||   ||||||||| ||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 3209518 - 3209441
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacacc 237  Q
    |||||||||||  |||||||| ||||||||||||||  ||| || || | |||||||||||||||| |||||||||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacactgacacgacacc 3209441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 7248488 - 7248379
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| ||||| | |||||| |||| || ||    ||| |||| | ||||||||||||| ||| ||||||||||||| || ||     
T  7248488 ctatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacacgactccaacacatataattaccctgaat 7248389  T
Q  260 tatgtgattt 269  Q
    ||||||||||    
T  7248388 tatgtgattt 7248379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 8365447 - 8365560
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||||| |||||| |||||||||||||| | || || ||   ||||||||| ||| ||||||||||||||  ||| | |||||||||  ||    
T  8365447 cctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaa 8365546  T
Q  259 atatgtgatttttt 272  Q
     |||||||| ||||    
T  8365547 ttatgtgatatttt 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 26562770 - 26562709
Alignment:
Q  209 tgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||| |||||||||||||||||||||| |  |||||||||||||||| || |||||||||||    
T  26562770 tgtgccgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgatttt 26562709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 4878062 - 4877991
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||| |||||||||||||| | || || ||  |||||||||| ||||||||||||    
T  4878062 cctatgaagcacggacactcctcggattaggcgtgtc-ctgtgtcggacatgtgtcgtgtccgacaccgacac 4877991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 10649408 - 10649372
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||||||||||||||||    
T  10649408 cctatgaagcacggacactccttggattaggcgtgtc 10649372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 31385048 - 31385009
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggt 31385009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 34446690 - 34446612
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtc-gtgttcgacaccgacacgacacc 237  Q
    |||||||||||||||||||||||||||||| ||||| | || |||||   | ||| ||||| |||||||||||||||||    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacc 34446612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 8776907 - 8776948
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  8776907 cctatgaagcacggacactcctcggattaggtgtgtctcggt 8776948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 10842652 - 10842611
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggta 201  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  10842652 ctatgaagcacggacactcctcggattagccgtgtctcggta 10842611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 11424691 - 11424752
Alignment:
Q  211 tgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    ||||||||||||||||||||| |||||| |||||||||||| | | || ||| |||||||||    
T  11424691 tgtcgtgttcgacaccgacacaacaccaacacatataattatattgaattatatgatttttt 11424752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 5732510 - 5732569
Alignment:
Q  231 cgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtc 291  Q
    |||||||  ||||||||||||||||||||||||||||||| |  ||||||||||| |||||    
T  5732510 cgacaccgacacatataattacactaaaatatgtgattttct-caaattattaacggtgtc 5732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 7938219 - 7938179
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  7938219 ctatgaagcacggacactcctcggatcaggcgtgtctcggt 7938179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 9025490 - 9025577
Alignment:
Q  227 gacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgttcgtatccatgcttcatag 315  Q
    |||||||||||  |||||||||||||||| || ||||||||||| |  ||||||||| | |||||| ||| ||| ||| ||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttct-caaattattagcagtgtccatgtccgtttccgtgcttcatag 9025577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 9523001 - 9522909
Alignment:
Q  180 ttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    ||||||||||||||||||||| || ||   ||||||  | |||||||||||| |||||  ||| | |||||||||| || |||||||||||||    
T  9523001 ttggattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatgtgatttttt 9522909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 17841530 - 17841566
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctc 197  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctc 17841566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 33001228 - 33001300
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||  |||||| ||||||||||||| | ||||| |||||   ||||||||| ||||||||||||    
T  33001228 cctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacac 33001300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 7151473 - 7151430
Alignment:
Q  229 cacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    |||||||||| |||||||||||||||| || |||||||||||||    
T  7151473 cacgacaccaacacatataattacacttaattatgtgatttttt 7151430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 9195734 - 9195793
Alignment:
Q  211 tgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||||  |||||| ||||||||||  ||||||||||||||||||| ||||| |||||    
T  9195734 tgtcgtgtcagacacctacacgacaccgacacatataattacactaaattatgtcatttt 9195793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 28152217 - 28152146
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||| |||||||| ||||||||| |||| |||| || ||   ||||||||| ||||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 28152146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 7723199 - 7723233
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgt 194  Q
    ||||||||||||||||||||| |||||||||||||    
T  7723199 ctatgaagcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 10294186 - 10294129
Alignment:
Q  211 tgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatt 268  Q
    |||||||| ||||||| ||||||||||  |||||||||||||| | ||||||| ||||    
T  10294186 tgtcgtgtccgacaccaacacgacaccgacacatataattacattgaaatatgcgatt 10294129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 13360313 - 13360350
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctc 197  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  13360313 ctatgaagcacggacactcttcggattaggcgtgtctc 13360350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 34868777 - 34868838
Alignment:
Q  222 acaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattatta 283  Q
    |||| |||||||||| |  ||||||||||||||| || |||||| |||||| ||||||||||    
T  34868777 acactgacacgacactaagacatataattacactgaattatgtggtttttttaaaattatta 34868838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 426477 - 426513
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||||  |||||||||||||    
T  426477 cctatgaagcacggacactcctcagattaggcgtgtc 426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 7996325 - 7996357
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||| |||||||||||||||||||||    
T  7996325 tgaagcacggagactccttggattaggcgtgtc 7996357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 8022476 - 8022444
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||| |||||||||||||||||||||    
T  8022476 tgaagcacggagactccttggattaggcgtgtc 8022444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 8805523 - 8805559
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  8805523 cctatgaagcacggacactcctcggattaggcatgtc 8805559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 10888969 - 10889013
Alignment:
Q  226 cgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||||||| | |||||||||| |||||||| |||||||||||    
T  10888969 cgacacgacactaacacatataatcacactaaattatgtgatttt 10889013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 5926 - 6042
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    ||||| ||||||||||||||||||| ||||||||||| || |||||   ||||||||||||||||||| ||||||||  ||||||||||||||||  | |    
T  5926 tatgaggcacggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcatt 6025  T
Q  261 atgtgattttttaaaaa 277  Q
     ||||||||| ||||||    
T  6026 ttgtgattttctaaaaa 6042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 15816058 - 15816170
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||| || |||||||||||||| |||| || ||   ||||||||| ||||||| ||||||||||  ||| |||||||||||||||     
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaat 15816157  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  15816158 tatgtgatttttt 15816170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 24205749 - 24205842
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacac 254  Q
    |||||| ||||||||||||| |||||||||||||  |||| |||||  || || ||||||||||||||||| |||||| ||||||| |||||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacacaacaccaacacatattattacac 24205842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 11803389 - 11803254
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| ||||||| |||||  | || || ||  |||||||| | | ||||| |||| |||||| |||||||||||||||| ||     
T  11803389 ctatgaagcacggacactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacacaacaccaacacatataattacactgaat 11803290  T
Q  260 tatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    ||||||||||| |  ||||||||||| ||||| ||||    
T  11803289 tatgtgattttct-taaattattaacagtgtcagtgt 11803254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 34450961 - 34451037
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacac 236  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||   ||||||||| |||||||||||||||||    
T  34450961 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacac 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 11927015 - 11927145
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||| | ||||||||||||||||| | |  ||    ||||||||  |||||| ||||||||||  |||||||||||||||| ||     
T  11927015 ctatgaagcacggacactcatcggattaggcgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactgaat 11927114  T
Q  260 tatgtgattttttaaaaattattaaccgtgtc 291  Q
    ||||||||||| |  ||||||||||| |||||    
T  11927115 tatgtgattttat-caaattattaacagtgtc 11927145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 29447574 - 29447467
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||||||  |||||| | |||| |||| || ||    ||||||||  |||||||||||||||||| |||||||||||||||| ||     
T  29447574 ctatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaat 29447475  T
Q  260 tatgtgat 267  Q
    ||||||||    
T  29447474 tatgtgat 29447467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 18964309 - 18964190
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacg--acaccatcacatataattacactaa 257  Q
    ||||||||||| ||||||||| |||| ||||||||||| || | |||   ||||||||||| || ||||||||  |||||  |||||||||||||| | |    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtctccgtgttagacaggtgtcgtgttcaacgccgacacgacacaccgacacatataattacattga 18964210  T
Q  258 aatatgtgattttttaaaaa 277  Q
    | ||||||||||| ||||||    
T  18964209 attatgtgattttctaaaaa 18964190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 22652106 - 22651994
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| ||||||| |||||| |||| || ||    |||||||| ||||||||||||||||||  ||| | |||||| | | ||     
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaat 22652007  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  22652006 tatgtgatttttt 22651994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 11944795 - 11944665
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||| |||||| | ||||||||||||||||||| || ||    ||||||||  |||| | ||||||||||  |||||||||||||||| |      
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattacactgagt 11944696  T
Q  260 tatgtgattttttaaaaattattaaccgtgtc 291  Q
    ||||||||||| |  ||||||||||| |||||    
T  11944695 tatgtgattttat-caaattattaacagtgtc 11944665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 26902104 - 26902214
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||||||  ||| ||||||||| | ||  ||||   ||||||||| ||||||  | ||||||||  |||||||||||||||| ||     
T  26902104 ctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaat 26902203  T
Q  260 tatgtgatttt 270  Q
    |||||||||||    
T  26902204 tatgtgatttt 26902214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 13397671 - 13397630
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13397671 cctatgaagcacggacactccttgaattaggcgtgtctcggt 13397630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 29447040 - 29447149
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    |||||||||||||||||||| ||||||||||||||  ||| |||||    |||||||| ||||||||||| ||||||  ||| | || ||||| | || |    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaatt 29447139  T
Q  261 atgtgatttt 270  Q
    ||||||||||    
T  29447140 atgtgatttt 29447149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 29510232 - 29510345
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| |||||||| ||||| |||| || ||   | ||||||| |||||||||||| |||||  ||| | |||||| ||| ||    
T  29510232 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaa 29510331  T
Q  259 atatgtgatttttt 272  Q
     | |||||||||||    
T  29510332 ttttgtgatttttt 29510345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 28745628 - 28745553
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgaca 235  Q
    ||||||||||||||||||||||| ||||| | |||||||||  | ||   ||||||||| ||||||||||||||||    
T  28745628 ctatgaagcacggacactccttgaattagacttgtctcggtgacggacaggtgtcgtgtccgacaccgacacgaca 28745553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 33405324 - 33405395
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||| ||||||||||||| ||||||||| ||||||  ||| |||||  |||||||||| ||||||||||||    
T  33405324 ctatggagcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacac 33405395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 2572035 - 2572097
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    ||||||||| |||||| |||||||||||  ||| | ||||||||||||| |||||||||||||    
T  2572035 gtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgatttttt 2572097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 13403226 - 13403185
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  13403226 cctatgaagcacggacactccttgaattaagcgtgtctcggt 13403185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 13436910 - 13436950
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  13436910 ctatgaagcacagacactccttggattaggcgtgtcccggt 13436950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 3951476 - 3951547
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||| ||||||||||||||||||||  | || |||||   |||||||||  |||||||||||    
T  3951476 ctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacac 3951547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 4673353 - 4673388
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgt 194  Q
    |||||||||||| |||||||||||||||||||||||    
T  4673353 cctatgaagcacagacactccttggattaggcgtgt 4673388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 9383085 - 9383050
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||| |||||||||||||||||    
T  9383085 ctatgaagcacggacactgcttggattaggcgtgtc 9383050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 31514973 - 31514938
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31514973 ctatgaagcacggacactcctcggattaggcgtgtc 31514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 34127172 - 34127207
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||||||||| |||||    
T  34127172 ctatgaagcacggacactccttggattaggtgtgtc 34127207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 13009423 - 13009457
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||| ||||||||||||||||||||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtc 13009457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 43737752 - 43737822
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||||||| |||||| || | || |||||    |||||||| ||||||||||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccgacac 43737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 3025668 - 3025599
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||| ||||||| |||||| | || |||||   ||||||||| |||||| |||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacac 3025599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 6065586 - 6065659
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacga 233  Q
    ||||||||||||||||||||||| |||| ||||||  |||| || ||  |||||||||| |||||  |||||||    
T  6065586 ctatgaagcacggacactccttgaattatgcgtgttccggtgtcggacatgtgtcgtgtccgacattgacacga 6065659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 25172680 - 25172737
Alignment:
Q  213 tcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||| |||||  |||||||||||  |||||||||||||| |||||||||| |||||    
T  25172680 tcgtgtccgacattgacacgacaccgacacatataattacattaaaatatgtaatttt 25172737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 39954277 - 39954318
Alignment:
Q  229 cacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||| |||| |||||||||||||||||||| |||||||||||    
T  39954277 cacggcaccgtcacatataattacactaaattatgtgatttt 39954318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 5813712 - 5813640
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||| |||||||||||||||||   |||||||||||| |||| || ||   ||||||||| ||||||||||||    
T  5813712 cctacgaagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 5813640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 17751775 - 17751735
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggt 17751735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 17760762 - 17760722
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggt 17760722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 34784911 - 34785028
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||| ||||||||| | || ||||||||| | || |||||   ||||||||| ||| ||||||||||||||  |||||||||||||||||||     
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaat 34785010  T
Q  260 tatgtgattttttaaaaa 277  Q
    ||||||||||| ||||||    
T  34785011 tatgtgattttctaaaaa 34785028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 35056998 - 35056903
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacact 255  Q
    |||||||||||||||||||||  |||||||||||| || || || ||   ||||||||| ||||||||||||||||||  ||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacact 35056903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 37419874 - 37419761
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| |||||||||||||| |||| || ||   |  |||||| ||||||||||||||||||  ||| | |||||||||| ||    
T  37419874 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaa 37419775  T
Q  259 atatgtgatttttt 272  Q
     | |||||||||||    
T  37419774 ttttgtgatttttt 37419761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 11223793 - 11223910
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||||||  ||||||||||||| |||| |||||   ||||||||| ||||||| ||| ||||||  ||| | |||||||||| ||     
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcaga-cagtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaat 11223891  T
Q  260 tatgtgattttttaaaaat 278  Q
    ||||| ||||||| |||||    
T  11223892 tatgttattttttcaaaat 11223910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 2438661 - 2438730
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||| |||||||||||||| |||| || ||  |||||||||| ||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 2438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 18054784 - 18054849
Alignment:
Q  212 gtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaa 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  | | ||||||||| ||||||    
T  18054784 gtcgtgttcgacaccgacacgacaccaacacatataattacactgcagtttgtgattttctaaaaa 18054849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 36096304 - 36096421
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||| |||| | ||||||||| | || |||||   ||||||||| ||||| ||||||||||||  || |||||||||||||  |     
T  36096304 ctatgaagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcat 36096403  T
Q  260 tatgtgattttttaaaaa 277  Q
    | ||||||||| ||||||    
T  36096404 tttgtgattttctaaaaa 36096421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 30717459 - 30717571
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||||||||||||||| || | || ||  |   ||||||||| ||||| |||||||||| |  ||| | |||||||||| ||     
T  30717459 ctatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaat 30717558  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  30717559 tatgtgatttttt 30717571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 24009414 - 24009343
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||   ||||||||| ||||||||||||    
T  24009414 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 24009343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 36756275 - 36756382
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||||||| ||||||||| |||||||||||||  |||| || ||  ||||| |||||||||||  ||||||||||  ||| |||||||||||| || ||    
T  36756275 atgaagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaatta 36756374  T
Q  262 tgtgattt 269  Q
    ||| ||||    
T  36756375 tgttattt 36756382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 2665869 - 2665933
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaa 276  Q
    |||| |||||| |||||||||| |||||  ||||||||||||||||||| ||||||||||| |||||    
T  2665869 gtgttgtgttcaacaccgacacaacacc--cacatataattacactaaattatgtgattttctaaaa 2665933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 18840953 - 18841024
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| |||||||| ||||| |||| || ||  ||||||||||  |||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacac 18841024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 18255945 - 18255979
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtc 18255979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 26769641 - 26769547
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacac 254  Q
    ||||||||||||||||||||| |||||||||||||| | || || ||   ||||||||| ||| ||||||| ||||||  ||| | |||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattacac 26769547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 44635612 - 44635572
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  44635612 ctatgaagcacggacactcctcagattaggcgtgtctcggt 44635572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 20539631 - 20539670
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcg 198  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  20539631 cctatgaagcacggacactcctcggatcaggcgtgtctcg 20539670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 19614264 - 19614218
Alignment:
Q  209 tgtgtcgtgttcgacaccgacacgacaccatcacatataattacact 255  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  19614264 tgtgtcgtgttcgacaccgacacgatactgacacatataattacact 19614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 42511322 - 42511411
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataatt 250  Q
    ||||||||||||||||||||| ||||||| |||||| | || || ||   |||| |||| |||||| || ||||||||| |||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacactga-acgacaccaacacatataatt 42511411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 20922937 - 20922974
Alignment:
Q  240 cacatataattacactaaaatatgtgattttttaaaaa 277  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  20922937 cacatataattacactaaattatgtgattttctaaaaa 20922974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 42832234 - 42832267
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||| |||||||||||||||||||||||||    
T  42832234 atgaagcaaggacactccttggattaggcgtgtc 42832267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 19536360 - 19536396
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  19536360 cctatgaagcatggacactcctcggattaggcgtgtc 19536396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 19942382 - 19942338
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcaga 206  Q
    |||||||| |||||||||| |||||||||||||| |||| |||||    
T  19942382 atgaagcatggacactcctcggattaggcgtgtcccggtgtcaga 19942338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 21616865 - 21616829
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  21616865 cctatgaagcacggacacttcttggattagccgtgtc 21616829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 34993921 - 34993957
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  34993921 cctatgaagcacgaacactccttgaattaggcgtgtc 34993957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 38117099 - 38117139
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggt 38117139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 24339772 - 24339660
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||| ||||||| |||||||||||||| |||| || ||   ||||||||| ||||||||||||||||||  ||| | |||||||||| ||     
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 24339673  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  24339672 tatgtgatttttt 24339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 2334379 - 2334268
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||| ||||||||||||| ||||||| ||||| || || || ||  |||||||||| |||||| |||||||||||  ||| | |||||||||||||     
T  2334379 ctatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaat 2334281  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  2334280 tatgtgatttttt 2334268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 7438837 - 7438706
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||||| ||||||||||||   || ||  |  ||||||||||| |||||||||| ||||||  ||| | |||||||| | ||    
T  7438837 cctatgaagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaa 7438738  T
Q  259 atatgtgattttttaaaaattattaaccgtgtc 291  Q
     |||||||||||||  ||||||||||| |||||    
T  7438737 ttatgtgatttttt-caaattattaactgtgtc 7438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 32308249 - 32308140
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    ||||||||| | |||||||| |||||||  |||||||||| || ||  |||||||||| | |||||||||||||||   |||||| ||||||||| || |    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaatt 32308150  T
Q  261 atgtgatttt 270  Q
    ||||||||||    
T  32308149 atgtgatttt 32308140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 8160492 - 8160436
Alignment:
Q  214 cgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||    
T  8160492 cgtgttcgacaccgacacgataccaacacatataattacactaaattatgtaatttt 8160436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 26033392 - 26033502
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||| ||||||||||||| |||||||| ||||| ||||||| ||   ||||| |||  ||||||||||||| |||  ||| | |||||||||| || ||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaatta 26033491  T
Q  262 tgtgatttttt 272  Q
    |||||||||||    
T  26033492 tgtgatttttt 26033502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 9778625 - 9778584
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  9778625 cctatgaagcacggacactccttggattaggcgtgtcccggt 9778584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 15902903 - 15902842
Alignment:
Q  209 tgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||| ||| |||||||| |||||  ||||||||||||||||||| |||||||||||    
T  15902903 tgtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgatttt 15902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 15680929 - 15680857
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||| | ||||| ||||||||||| || ||   ||||||||| ||||||||||||    
T  15680929 cctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 15680857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 33994332 - 33994260
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||| |||| |||||||||||||||||||||||||||| |  ||  ||||||||||  |||||||||||    
T  33994332 cctatgaaacacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacac 33994260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 11665370 - 11665481
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    ||||||||||||||| |||| | |||||  |||| ||||| || ||   ||||||||||||||||||||| |||| |  ||| |||||||| ||| || |    
T  11665370 tatgaagcacggacattcctcgtattagatgtgtttcggtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaatt 11665469  T
Q  261 atgtgatttttt 272  Q
    ||||||||||||    
T  11665470 atgtgatttttt 11665481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 21880271 - 21880200
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||| || ||||||||||||||  ||| || ||  |||||||||| ||||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 5409770 - 5409836
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacac 225  Q
    |||||||||||||||||||||| |||||||||||||| |||| || ||   ||||||||| ||||||    
T  5409770 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 9408265 - 9408375
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    |||||||||||||| || | ||||||||||||| | ||| || ||  | | ||||||  |||||||| ||||||||  ||| | ||||||||||||| ||    
T  9408265 atgaagcacggacattcttcggattaggcgtgttttggtgtcggatatatatcgtgtctgacaccgatacgacaccgacacttgtaattacactaaatta 9408364  T
Q  262 tgtgatttttt 272  Q
    |||||||||||    
T  9408365 tgtgatttttt 9408375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 8842282 - 8842319
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  8842282 tgaagcacggacactccttggattaggcgtgtcccggt 8842319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 21560610 - 21560521
Alignment:
Q  183 gattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    |||||||||||| ||||| | |||  ||| ||||||| |||||||| ||||||||  ||| | |||||||||| || |||||||||||||    
T  21560610 gattaggcgtgtttcggtgttagacatgtatcgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgtgatttttt 21560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 35862071 - 35862035
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35862071 cctatgaagcacggacactcctcggattaggcgtgtc 35862035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 598327 - 598256
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||| || |||||||||||||| |||| || ||   |||||||||  |||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 4795018 - 4794915
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    |||||||||| |||||| |||||||||| ||||| | ||| |||||   ||||||||| ||||||||| |||  |||  ||| |||||||||||| || |    
T  4795018 tatgaagcacagacacttcttggattagacgtgtttaggtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataattacactgaatt 4794919  T
Q  261 atgt 264  Q
    ||||    
T  4794918 atgt 4794915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 5307375 - 5307340
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||| |||||||||||||||||||||||    
T  5307375 ctatgaagcacgtacactccttggattaggcgtgtc 5307340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 16341561 - 16341491
Alignment:
Q  225 ccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    |||||||||||||  |||||||||||||||| || ||||||||||| |  ||||||||| | ||||||||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttct-caaattattatcagtgtccgtgt 16341491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 25822785 - 25822690
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacact 255  Q
    ||||||| |||||||||||||| |||||||| |||| || | |||||   ||||||||| ||| ||||| ||||||||  ||| | ||||||||||    
T  25822785 ctatgaaacacggacactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacact 25822690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 28155673 - 28155638
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||| |||||||||||||||||||    
T  28155673 ctatgaagcacggacattccttggattaggcgtgtc 28155638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 29763129 - 29763164
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtc 29763164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 18213033 - 18213079
Alignment:
Q  231 cgacaccatcacatataattacactaaaatatgtgattttttaaaaa 277  Q
    |||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  18213033 cgacaccgacacatataattacactaaattatgtgattttctaaaaa 18213079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 20549909 - 20549839
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||| ||||||| ||||||||||||||||  | || ||  ||||| |||| ||||||||||||    
T  20549909 tatgaagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacac 20549839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 30813916 - 30813882
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgt 194  Q
    ||||||||||||||||||||| |||||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 5233692 - 5233632
Alignment:
Q  227 gacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgt 288  Q
    ||||| |||||| ||||||||||||||||| | ||||||||||| |  ||||||||||||||    
T  5233692 gacacaacaccaacacatataattacactagattatgtgattttct-caaattattaaccgt 5233632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 17307958 - 17307913
Alignment:
Q  225 ccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||||||| |||||||||||||||| || ||||| |||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttatttt 17307913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 18039067 - 18039006
Alignment:
Q  222 acaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattatta 283  Q
    ||||||||||||||||  ||| | |||||||||| || |||||||||||||  |||||||||    
T  18039067 acaccgacacgacaccgacacttgtaattacactgaattatgtgatttttttcaaattatta 18039006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 6490835 - 6490795
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggt 6490795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 7328686 - 7328730
Alignment:
Q  226 cgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||||||||  ||||||||||||||||||| ||||| |||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttatttt 7328730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 17852119 - 17852079
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggt 17852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 22602705 - 22602749
Alignment:
Q  226 cgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||||||||  |||||||||||||||| || |||||||||||    
T  22602705 cgacacgacaccgacacatataattacactgaattatgtgatttt 22602749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 38143281 - 38143241
Alignment:
Q  232 gacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    ||||||| |||||||||||||| |||| |||||||||||||    
T  38143281 gacaccaacacatataattacattaaattatgtgatttttt 38143241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 43027404 - 43027444
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggt 43027444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 39698671 - 39698559
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||    |||||||| |||||||||||||||||   ||| | |||||||||| ||     
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaat 39698572  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  39698571 tatgtgatttttt 39698559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 6401627 - 6401511
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    ||||||||||||||||||||||||| |||||| || | || |||||   ||||||||| |||||| |||||||||||  ||||||||||||||||  | |    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatt 6401528  T
Q  261 atgtgattttttaaaaa 277  Q
     ||||||||| ||||||    
T  6401527 ttgtgattttctaaaaa 6401511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 21814391 - 21814274
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||| ||| ||||||||| ||||||||| | ||  ||||   ||||||||| ||||||||||||||||||  ||||||||||||||||  |     
T  21814391 ctatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcat 21814292  T
Q  260 tatgtgattttttaaaaa 277  Q
    | ||||||||| ||||||    
T  21814291 tttgtgattttctaaaaa 21814274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 21522880 - 21522764
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||| |||||||||||| |||||||||||||||| ||||  | ||   ||||||||| ||||||||||||||||||  ||  | |||||||||| ||     
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaat 21522781  T
Q  260 tatgtgattttttaaaa 276  Q
    ||||| |||||||||||    
T  21522780 tatgttattttttaaaa 21522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 21533446 - 21533330
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||| |||||||||||| |||||||||||||||| ||||  | ||   ||||||||| ||||||||||||||||||  ||  | |||||||||| ||     
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaat 21533347  T
Q  260 tatgtgattttttaaaa 276  Q
    ||||| |||||||||||    
T  21533346 tatgttattttttaaaa 21533330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 19452998 - 19453134
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatat 262  Q
    |||||||||||| |||||||||| |||||| |||| || | |||  |||||||||| |||||  |||||||||||  |||||||||||||  || | | |    
T  19452998 tgaagcacggacgctccttggataaggcgtatctccgtgtgagacatgtgtcgtgtccgacattgacacgacaccgacacatataattacggtatatttt 19453097  T
Q  263 gtgattttttaaaaattattaaccgtgtccgtgttcgt 300  Q
    |||||||| |||||| | ||||| ||||| ||||||||    
T  19453098 gtgattttctaaaaaat-ttaactgtgtcggtgttcgt 19453134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 37328774 - 37328884
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||||||||||||||||||| |||||| |||| || ||||||| || |  |  ||||| ||||||||||||||||||  ||||| |||||||||| ||    
T  37328774 cctatgaagcacggacactcctcggattaagcgtatcccggtatcggacgcat--cgtgtccgacaccgacacgacaccgacacatgtaattacactgaa 37328871  T
Q  259 atatgtgattttt 271  Q
     | ||||||||||    
T  37328872 ttttgtgattttt 37328884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 7677835 - 7677723
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||| ||| ||||| |||||||||||||| |||| || ||  |||| |||||  |||||||||||||||||  ||| | ||||| |||| ||     
T  7677835 ctatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaat 7677736  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  7677735 tatgtgatttttt 7677723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 19579829 - 19579721
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||| |||| |||||||| |||||||||||||| |||| | |||  | |||||||| |||||| |||||||||||  ||| | ||||| ||||||| ||    
T  19579829 atgaaacacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaatta 19579730  T
Q  262 tgtgatttt 270  Q
    |||||||||    
T  19579729 tgtgatttt 19579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 21542159 - 21542056
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaat 260  Q
    ||||| ||||||||| |||||||||| |||||||| |||| || ||   ||||||||| ||||||||||||||||||  ||| | |||||||||| || |    
T  21542159 tatgatgcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 21542060  T
Q  261 atgt 264  Q
    ||||    
T  21542059 atgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 32766872 - 32766965
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattaca 253  Q
    |||||||||||||||||||||  |||||| ||| ||  ||| || ||   ||||||| ||||||||||||||||||| | ||||||||||||||    
T  32766872 ctatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattaca 32766965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 11686069 - 11685966
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||||||||||||  |||||| |||| || ||| |  ||   ||||||||| ||||||||| ||||||||  |||||||||||||||||||    
T  11686069 cctatgaagcacggacactcctccgattagccgtgccttggttttggacacgtgtcgtgtccgacaccga-acgacaccgacacatataattacactaaa 11685971  T
Q  259 atatg 263  Q
     ||||    
T  11685970 ttatg 11685966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 18592200 - 18592093
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatat 262  Q
    |||||||||||||||| | | ||||| |||||| || | |||||   |||| |||| ||||||||||||||||||  |||||||||||||| | || |||    
T  18592200 tgaagcacggacactcatcgaattagccgtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattat 18592101  T
Q  263 gtgatttt 270  Q
    || |||||    
T  18592100 gtaatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 21576685 - 21576756
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| |||||||||||||| | || |||||   ||||||||| ||||| ||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacac 21576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 14873642 - 14873601
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtgtcccggt 14873601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 10298670 - 10298634
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10298670 cctatgaagcacggacactcctcggattaggcgtgtc 10298634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 28588613 - 28588685
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||| |||||||| | |||||| |||||||  ||| |||||  |||||||||| ||||||||||||    
T  28588613 cctatgaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccgacaccgacac 28588685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 17123166 - 17123131
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtc 17123131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 22423764 - 22423799
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtc 22423799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 35017100 - 35017057
Alignment:
Q  227 gacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||    
T  35017100 gacacgacactatcccatataattacactaaattatgtgatttt 35017057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 35017162 - 35017127
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtc 35017127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 36838650 - 36838615
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36838650 ctatgaagcacagacactccttggattaggcgtgtc 36838615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 4105374 - 4105332
Alignment:
Q  164 gaagcacggacactccttggattaggcgtgtctcggtatcaga 206  Q
    ||||||||||||||||| |||||||||||||| | ||||||||    
T  4105374 gaagcacggacactcctcggattaggcgtgtcccagtatcaga 4105332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 21190998 - 21191031
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtc 21191031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 23321168 - 23321210
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcaga 206  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||    
T  23321168 atgaagcacggacactc--tggattaggcgtgtcccggtatcaga 23321210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 30502330 - 30502399
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||| ||| |||||||||||||| |||| | || || ||  |||||||||| ||||||||||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 30502399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 30542673 - 30542742
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||| ||| |||||||||||||| |||| | || || ||  |||||||||| ||||||||||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 30542742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 36642741 - 36642821
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtc 291  Q
    ||||||||| ||||||| ||| ||||||  ||| |||| |||||||||||||||| | |||||  ||||||||||| |||||    
T  36642741 gtgtcgtgtccgacaccaacatgacaccgacacttatatttacactaaaatatgtcacttttt-caaattattaactgtgtc 36642821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 41995581 - 41995548
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  41995581 atgaagcacggacactcctaggattaggcgtgtc 41995548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 43001922 - 43001889
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtc 43001889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 2437030 - 2436994
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtct 196  Q
    |||||||||||| |||||||| |||||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtct 2436994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 6471886 - 6471953
Alignment:
Q  228 acacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    ||||||||||  |||||||||||||||| || ||||||||||| |  ||||||||| ||||||| ||||    
T  6471886 acacgacacccacacatataattacactgaattatgtgattttct-caaattattagccgtgtcagtgt 6471953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 16304366 - 16304406
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  16304366 ctatgaagcacggacattcctcggattagacgtgtctcggt 16304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 19820328 - 19820368
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggt 19820368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 39268541 - 39268573
Alignment:
Q  163 tgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||| ||||||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtc 39268573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 39695950 - 39695986
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  39695950 cctatgaagcaccgacactcctaggattaggcgtgtc 39695986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 42029871 - 42029803
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccga 228  Q
    |||||| |||||||||||||| |||| ||||||||||  ||  ||||  |||||||||| |||||||||    
T  42029871 ctatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacaccga 42029803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 43565001 - 43564965
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||| || ||||||||||||||    
T  43565001 cctatgaagcacggacacttctcggattaggcgtgtc 43564965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 241724 - 241613
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||| || |||||||||||||| |||| || ||   ||||||||| ||||||| ||||||||||  |||  ||||||||||||||     
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaat 241625  T
Q  260 tatgtgattttt 271  Q
    ||||||||||||    
T  241624 tatgtgattttt 241613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 4987222 - 4987332
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    |||||| |||||||||||| |||||||||||||| |||| || ||   ||||||||| | ||||||||||| ||||| ||| | |||||||||| || ||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  262 tgtgatttttt 272  Q
    |||||||||||    
T  4987322 tgtgatttttt 4987332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 20503584 - 20503513
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||  |||||||||| | ||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacac 20503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 55401194 - 55401123
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||   ||||||||| ||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 55401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 11666070 - 11665964
Alignment:
Q  164 gaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatg 263  Q
    ||||||||||||||||||| |||||||||||  || |||||||   |||||||||   ||| | ||||||||||  ||||||||||||||||||| | ||    
T  11666070 gaagcacggacactccttgaattaggcgtgttccgatatcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaattgtg 11665971  T
Q  264 tgatttt 270  Q
    |||||||    
T  11665970 tgatttt 11665964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 8789489 - 8789561
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatc--agaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||| ||||||||||||||||||| ||  | | ||||||||||| ||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacac 8789561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 14209244 - 14209127
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||||||||| ||||||||||| || || || | ||  |   ||||||||| |||||||||||||||||   ||| | |||||||||| ||    
T  14209244 cctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaa 14209145  T
Q  259 atatgtgattttttaaaa 276  Q
     |||||||||||||||||    
T  14209144 ttatgtgattttttaaaa 14209127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 40993274 - 40993346
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    ||||||||||| |||||||||| |||||||||||||| |||| || ||  |||||||||| ||||||||||||    
T  40993274 cctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 40993346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 55213093 - 55212963
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    |||||| |||||||| ||| ||||||||| |||||||||||| || ||   |||| |||  |||||||||||| |||||  ||| | ||||| |||||||    
T  55213093 cctatgtagcacggatacttcttggattatgcgtgtctcggtgtcggacacgtgttgtgcccgacaccgacac-acaccgacacttgtaattgcactaaa 55212995  T
Q  259 atatgtgattttttaaaaattattaaccgtgtc 291  Q
     ||||||||||||| |||||||||||| |||||    
T  55212994 ttatgtgatttttt-aaaattattaactgtgtc 55212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 13845465 - 13845536
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||   || |||||| ||||||||||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacac 13845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 34185052 - 34185182
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| |||||||||||||| |||| || ||    |||| ||| |||||  |||||||||||  ||| | |||||||||| ||     
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaat 34185151  T
Q  260 tatgtgattttttaaaaattattaaccgtgtc 291  Q
    | |||||||||||  ||||||||| |||||||    
T  34185152 tgtgtgatttttt-gaaattattagccgtgtc 34185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 25065037 - 25064927
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||| |||||| |||||||| |||| |  |||||| |||| |||||   ||||||||| ||||||| |||||| |||| ||||||  |||||||||||     
T  25065037 ctatggagcacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacacgataccaacacata--attacactaaat 25064940  T
Q  260 tatgtgatttttt 272  Q
    |||||||||||||    
T  25064939 tatgtgatttttt 25064927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 15314873 - 15314917
Alignment:
Q  228 acacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  15314873 acacgacaccaacacatataattacactaaattatgtgatttttt 15314917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 29508567 - 29508503
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacacc 226  Q
    |||||||||||||||| |||||||||| |||||| |||| || || ||||||||||| |||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtcggacgtgtgtcgtgtccgacacc 29508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 49651715 - 49651845
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaa 258  Q
    ||||||||||||||||||| || |||||||| ||||| |||| || ||  |||||||||| ||   |||||||||||||  ||| | |||||||| | ||    
T  49651715 cctatgaagcacggacacttctcggattaggtgtgtcccggtgtcggatatgtgtcgtgtccg-gtccgacacgacaccgacacttgtaattacagtgaa 49651813  T
Q  259 atatgtgattttttaaaaattattaaccgtgtc 291  Q
     |||||||||||||  ||||||||| |||||||    
T  49651814 ttatgtgatttttt-caaattattagccgtgtc 49651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 8039764 - 8039859
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacact 255  Q
    ||||||||||| || |||| | |||||| ||||||| |||| || ||  ||| || ||| ||||||||||||||||||  ||||||||||||||||    
T  8039764 ctatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacact 8039859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 16192728 - 16192814
Alignment:
Q  209 tgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    ||||||||||  ||||||||||||||| || |||||||||||||||| || ||||| ||||| |  ||||||||||| ||||| ||||    
T  16192728 tgtgtcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttct-caaattattaacggtgtcggtgt 16192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 34307735 - 34307819
Alignment:
Q  180 ttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||||||||||| |||||  ||  ||||||||| ||||||||||||||      ||| |||||||||||| ||||||||||||||    
T  34307735 ttggattaggcgtgtctcagtatcgaagacgtgtcgtgtccgacaccgacacga------cacttataattacactgaaatatgtgatttt 34307819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 41961578 - 41961673
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacac 254  Q
    ||||||||||||||||||| || |||||||||||||| | || || ||   ||||||||| ||| ||||||||||||||  ||| | |||||||||    
T  41961578 cctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacac 41961673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8842448 - 8842378
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgaca 230  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||  |  ||||||||||  ||||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgaca 8842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 16789141 - 16789018
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    |||||||||||||||||||||   |||||| ||||| || | |  ||  |||||| ||| |||||| |||||||||||| ||| |||||||||||| ||     
T  16789141 ctatgaagcacggacactcctcaaattaggtgtgtcccg-tgttggacatgtgtcatgtccgacactgacacgacaccaacacttataattacactgaat 16789043  T
Q  260 tatgtgattttttaaaaattattaac 285  Q
    ||| |||||||||  |||||||||||    
T  16789042 tatatgatttttt-taaattattaac 16789018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 11313795 - 11313839
Alignment:
Q  226 cgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||    
T  11313795 cgacacgacactaacacatataattacactaaattatgtgatttt 11313839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 283
Target Start/End: Complemental strand, 27505370 - 27505254
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| ||||||||| |||| |||| || ||   |||||||||      | |||||||||||  ||| | |||||||||| ||     
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgt------cagacacgacaccgacacttgtaattacacttaat 27505277  T
Q  260 tatgtgattttttaaaaattatta 283  Q
    ||||||| ||||||||||||||||    
T  27505276 tatgtga-tttttaaaaattatta 27505254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 4990912 - 4990947
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtc 4990947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 15999951 - 15999990
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggt 15999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 25948881 - 25948928
Alignment:
Q  225 ccgacacgacaccatcacatataattacactaaaatatgtgatttttt 272  Q
    |||||||||||||| ||| |||||||||||| || |||||||||||||    
T  25948881 ccgacacgacaccaacacttataattacactgaattatgtgatttttt 25948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 1389956 - 1389922
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||||||||||| ||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtc 1389922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 15864950 - 15864916
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||| ||||||||||||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtc 15864916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 14979269 - 14979228
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  14979269 cctatgaagcacggacactcctcgggttaggcgtgtcccggt 14979228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 28918120 - 28918087
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||| |||||||||||||||||||||||||    
T  28918120 atgaagcagggacactccttggattaggcgtgtc 28918087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 40052432 - 40052391
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    ||||||||||||| |||||||| |||||||||||||| ||||    
T  40052432 cctatgaagcacgaacactcctcggattaggcgtgtcccggt 40052391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 2408590 - 2408630
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||||||| ||||||| ||||||||||||| ||||    
T  2408590 ctatgaagcacggagactccttagattaggcgtgtcccggt 2408630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 3163971 - 3164011
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggt 200  Q
    |||||||||| |||||||||| | |||||||||||||||||    
T  3163971 ctatgaagcatggacactcctcgaattaggcgtgtctcggt 3164011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 5407198 - 5407234
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  5407198 cctatgaagcatggacactctttggattaggcgtgtc 5407234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 7171621 - 7171549
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||   ||||||||||||||||||||||| |||| || ||   ||||||||| ||||||| ||||    
T  7171621 cctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacac 7171549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 51206293 - 51206321
Alignment:
Q  160 ctatgaagcacggacactccttggattag 188  Q
    |||||||||||||||||||||||||||||    
T  51206293 ctatgaagcacggacactccttggattag 51206321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 9678 - 9786
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||||||||||||||||| ||||||  |||||| || | |||||   |||||||||  |||||| ||||||||||  |||||||||||||||| || ||    
T  9678 atgaagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaatta 9777  T
Q  262 tgtgatttt 270  Q
     ||||||||    
T  9778 agtgatttt 9786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 263303 - 263411
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaata 261  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  |   |||||||||  ||||||||||||||||   ||| |||||||||||| || ||    
T  263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaatta 263402  T
Q  262 tgtgatttt 270  Q
    |||| ||||    
T  263403 tgtggtttt 263411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 13523 - 13454
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||||||||| |||||   || ||||| | ||||||||| ||||||||||||    
T  13523 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 13454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 21804 - 21873
Alignment:
Q  162 atgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||||||||||| |||||   || ||||| | ||||||||| ||||||||||||    
T  21804 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 21873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 8917 - 8846
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||| ||||||  |||||||||||||||||| || ||   ||||||||| ||||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 8846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 53303 - 53200
Alignment:
Q  167 gcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtga 266  Q
    ||||||||||| |||||||||  |||||| |||| || ||   ||||| ||| ||||||||||||| ||||  ||| |||||||||||| || |||||||    
T  53303 gcacggacacttcttggattaaacgtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtga 53204  T
Q  267 tttt 270  Q
    ||||    
T  53203 tttt 53200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 8721 - 8647
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacga 233  Q
    |||||||||||||||||||||||||||||||||| || | || || ||   ||||||||||| |||| |||||||    
T  8721 cctatgaagcacggacactccttggattaggcgtatcccagtgtcggacacgtgtcgtgttcaacacagacacga 8647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 14646 - 14580
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacacc 226  Q
    |||||||||||| ||||||||| |||||||||||||||||| || ||   ||||||||| |||||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacacc 14580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 71856 - 71779
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacac 236  Q
    |||||||||||| ||||||||| ||||||| |||||| |||| || ||   |||| |||| |||||||||||||||||    
T  71856 cctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacac 71779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 92940 - 92875
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacacc 226  Q
    |||||||||||||||||||| ||||||||||||||  ||| || ||  |||||||||| |||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacacc 92875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 4821 - 4948
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacacgacaccatcacatataattacactaaaa 259  Q
    ||||||||||||||||||||| |||||||||||||| | || || ||  ||||||||||         ||| ||||||| ||| | |||||||||| ||     
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---------acaagacaccaacacttgtaattacactgaat 4911  T
Q  260 tatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    |||||||||||||  ||||||||| | ||||| ||||    
T  4912 tatgtgattttttttaaattattagctgtgtcggtgt 4948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 3428 - 3392
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtc 3392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 23588 - 23505
Alignment:
Q  213 tcgtgttcgacaccgacacgacaccatcacatataattacactaaaatatgtgattttttaaaaattattaaccgtgtccgtgt 296  Q
    |||||| ||||||||| |||||||   ||| |||||||||||| || |||||||||||||  || |||||||| ||||| ||||    
T  23588 tcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgattttttttaagttattaactgtgtcggtgt 23505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 45470 - 45541
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||| ||| || ||||||||||| |||| |||| |||||   ||||||||| ||||||||||||    
T  45470 ctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacac 45541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 46776 - 46741
Alignment:
Q  160 ctatgaagcacggacactccttggattaggcgtgtc 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46776 ctatgaagcacggacactcctcggattaggcgtgtc 46741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 403 - 473
Alignment:
Q  161 tatgaagcacggacactccttggattaggcgtgtctcggtatcagaggtgtgtcgtgttcgacaccgacac 231  Q
    |||||||||||||||||||| |||||||| ||||| |||| || ||   | ||||||| ||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacac 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 21279 - 21242
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtct 196  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  21279 cctatgaagcacggatactcctcggattaggcgtgtct 21242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 17859 - 17903
Alignment:
Q  210 gtgtcgtgttcgacaccgacacgacaccatcacatataattacac 254  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  17859 gtgtcgtgtccaacaccgatacgacaccgtcacatataattacac 17903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 44516 - 44564
Alignment:
Q  222 acaccgacacgacaccatcacatataattacactaaaatatgtgatttt 270  Q
    |||||||||||| |||  |||||||||||||||| || |||||||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgatttt 44564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 24156 - 24120
Alignment:
Q  159 cctatgaagcacggacactccttggattaggcgtgtc 195  Q
    |||||||||||||||||||| | ||||||||||||||    
T  24156 cctatgaagcacggacactcatcggattaggcgtgtc 24120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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