View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_low_6 (Length: 340)
Name: NF20812_low_6
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 36055015 - 36055324
Alignment:
| Q |
18 |
gtaatagtcttgtcagaaaacaaggttctcttccctccctcctctcattgattttccttctcttcctctgccnnnnnnnnnnnnnnnnnnncacaaagcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
36055015 |
gtaatagtcttgtcagaaaacaaggttctcttccctccctcctctcattgattttccttctcttcctctgccttttttttttcttt-----cacaaaggc |
36055109 |
T |
|
| Q |
118 |
aaatacttgaaatgaaatcatcctcaaggtttccaaactattctacgactgcgatttgaactgcgacatcaaagttttttattcctctaatgtttctatc |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36055110 |
aaatacttgaaatgaaatcattctcaaggtttccaaactattctatgactgcgatttgaactgcgacatcaaagttttttattcctctaatgtttctatc |
36055209 |
T |
|
| Q |
218 |
acgactacttgataacaattgaggccgattaaaccctattacgcgtgcgattctaaacattattgttaatcgcaacacaaccacggtttaaaaccctgca |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36055210 |
acgactacttgatcgcaattgaggccgattaaaccctattacgcgtgcgattctaaacattattgttaatcgcaacgcaaccacggtttaaaaccctgca |
36055309 |
T |
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| Q |
318 |
tatcattttcatctc |
332 |
Q |
| |
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||||||||||||||| |
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| T |
36055310 |
tatcattttcatctc |
36055324 |
T |
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